Category:PK/Class

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(Created page with "{| class="wikitable sortable" ! Category || Gene IDs {{#repeat:PK/Class/Table/Row|1| && 01.FAS && FAS_01 FAS_02 FAS_03 FAS_04 FAS_05 FAS_06 FAS_07 FAS_08 FAS_09 FAS_10 && 02.NRPS...")
 
(move 34.NRPS-PKS_VI to R-PKS back)
 
(9 intermediate revisions by 2 users not shown)
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{| class="wikitable sortable"
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==Iterative Type I PKS Class==
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! Category || Gene IDs
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 +
 
 +
{|
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|+ The Phylogeny of Ketosynthase Domain of 470 Iterative Type I PKS Genes
 +
|-
 +
| Phylogenetic inference was obtained with maximum-parsimony (MP) algorithms with a bootstrap test (1000 pseudo-replicates) in the MEGA package.
 +
| [[Image:PK-Class-IterativeTypeI.jpg]]
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|}
 +
 
 +
{| class="wikitable"
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! Category
 +
! Class
 +
! Gene IDs
 
{{#repeat:PK/Class/Table/Row|1|
 
{{#repeat:PK/Class/Table/Row|1|
−
&& 01.FAS && FAS_01 FAS_02 FAS_03 FAS_04 FAS_05 FAS_06 FAS_07 FAS_08 FAS_09 FAS_10
+
FAS 1 && 01.FAS && FAS_01 FAS_02 FAS_03 FAS_04 FAS_05 FAS_06 FAS_07 FAS_08 FAS_09 FAS_10
−
&& 02.NRPS-PKS(NFC) && An14g04850 Bact04 Bact16 Bact18 Fung034 Fung097
+
Bacterial 7&& 02.NRPS-PKS(NFC) && An14g04850 Bact04 Bact16 Bact18 Fung034 Fung097
 
&& 03a_bPR-PKS && Bact03 Bact05 Bact43
 
&& 03a_bPR-PKS && Bact03 Bact05 Bact43
 
&& 03b_bMSAS && Bact06 Bact14 Bact17 Bact20 Bact36 Bact42 Bact44
 
&& 03b_bMSAS && Bact06 Bact14 Bact17 Bact20 Bact36 Bact42 Bact44
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&& 06.Mycobacterium_3 && Bact01 Bact02 Bact24 Bact25 Bact26 Bact27 Bact32 Bact33 Bact41 Bact53 Bact54 Bact59
 
&& 06.Mycobacterium_3 && Bact01 Bact02 Bact24 Bact25 Bact26 Bact27 Bact32 Bact33 Bact41 Bact53 Bact54 Bact59
 
&& 07.Bacterial_PKS_mixed_species && Bact07 Bact08 Bact09 Bact10 Bact11 Bact12 Bact13 Bact19 Bact21 Bact22 Bact30 Bact45 Bact46 Bact47 Bact48 Bact49 Bact50 Bact60 Bact61 Bact62 Bact63 Bact64 Bact65 Bact66 Bact67
 
&& 07.Bacterial_PKS_mixed_species && Bact07 Bact08 Bact09 Bact10 Bact11 Bact12 Bact13 Bact19 Bact21 Bact22 Bact30 Bact45 Bact46 Bact47 Bact48 Bact49 Bact50 Bact60 Bact61 Bact62 Bact63 Bact64 Bact65 Bact66 Bact67
−
&& 08.NRPKS_I_(1)_OAS-Like && ANIA_07909 Fung020 Fung059 Fung065 Fung066 Fung068 Fung082 Fung099 Fung112 Fung115 Fung119 Fung127 Fung129 Fung131
+
NR-PKS 18&& 08.NRPKS_I_(1)_OAS-Like && ANIA_07909 Fung020 Fung059 Fung065 Fung066 Fung068 Fung082 Fung099 Fung112 Fung115 Fung119 Fung127 Fung129 Fung131
 
&& 09.NRPKS_I(2) && ACLA_043310 AFLA_108550 AFUA_4G00210 AFUA_4G14560 AFUB_071800 AFUB_100730 An04g09530 ANIA_00150 AO090023000444 ATEG_02434 ATEG_08451 ATer06 Fung019 Fung029 Fung107 Fung110 Fung113 Fung118 Fung123 Fung124 NFIA_045430 NFIA_101660 NFIA_101810
 
&& 09.NRPKS_I(2) && ACLA_043310 AFLA_108550 AFUA_4G00210 AFUA_4G14560 AFUB_071800 AFUB_100730 An04g09530 ANIA_00150 AO090023000444 ATEG_02434 ATEG_08451 ATer06 Fung019 Fung029 Fung107 Fung110 Fung113 Fung118 Fung123 Fung124 NFIA_045430 NFIA_101660 NFIA_101810
 
&& 10.NRPKS_I(3) && AFLA_060020 AFUA_7G00160 AFUB_086700 An11g07310 ANIA_06000 ANIA_07071 AO090701000530 Fung030 Fung088 Fung089 Fung134 NFIA_112240
 
&& 10.NRPKS_I(3) && AFLA_060020 AFUA_7G00160 AFUB_086700 An11g07310 ANIA_06000 ANIA_07071 AO090701000530 Fung030 Fung088 Fung089 Fung134 NFIA_112240
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&& 14.NRPKS_I(7)Pigment-1 && ACLA_076490 AFLA_006170 AFUA_2G17600 AFUB_033290 AFum01 AFum02 AFum03 AFum04 AFum05 AFum06 AFum07 An09g05730 ANIA_08209 ANid02 AO090102000545 Fung083 Fung116 Fung122 NFIA_093000
 
&& 14.NRPKS_I(7)Pigment-1 && ACLA_076490 AFLA_006170 AFUA_2G17600 AFUB_033290 AFum01 AFum02 AFum03 AFum04 AFum05 AFum06 AFum07 An09g05730 ANIA_08209 ANid02 AO090102000545 Fung083 Fung116 Fung122 NFIA_093000
 
&& 15.NRPKS_I(8)Pigment-2 && AFLA_116220 An03g05440 AO090010000048 ATEG_07500 ATer05 Fung039 Fung051 Fung054 Fung077 Fung090 Fung094 Fung104 Fung114 Fung121
 
&& 15.NRPKS_I(8)Pigment-2 && AFLA_116220 An03g05440 AO090010000048 ATEG_07500 ATer05 Fung039 Fung051 Fung054 Fung077 Fung090 Fung094 Fung104 Fung114 Fung121
−
&& 16.NRPKS_I(9) && AFLA_139410 AFla01 AFla02 AFla03 ANIA_07825 ANid01 AO090026000009 AOry01 APar02 APar03 Aspe01 Aspe02 Aspe04 Fung052 Fung057 Fung092 Fung100 Fung109 StcA
+
&& 16.NRPKS_I(9) && AFLA_139410 AFla01 AFla02 AFla03 AN7825 ANid01 AO090026000009 AOry01 APar02 APar03 Aspe01 Aspe02 Aspe04 Fung052 Fung057 Fung092 Fung100 Fung109 StcA
 
&& 17.NRPKS_I(10) && AFLA_082150 AO090005000961 ATEG_06206 Fung038 Fung053 Fung078 Fung091 Fung093 Fung103 Fung105 Fung125
 
&& 17.NRPKS_I(10) && AFLA_082150 AO090005000961 ATEG_06206 Fung038 Fung053 Fung078 Fung091 Fung093 Fung103 Fung105 Fung125
 
&& 18.NRPKS_II && AFLA_112840 AFUB_079710 AO090023000877 ATEG_07379
 
&& 18.NRPKS_II && AFLA_112840 AFUB_079710 AO090023000877 ATEG_07379
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&& 23.NRPKS_III(5) && An09g02100 AO090009000131 Fung024
 
&& 23.NRPKS_III(5) && An09g02100 AO090009000131 Fung024
 
&& 24.NRPKS_III(6) && ACLA_061390 AFUA_8G02350 AFUB_084240 ANIA_06448 ANIA_08383 ATEG_03629 ATEG_10080 Fung023 NFIA_096030
 
&& 24.NRPKS_III(6) && ACLA_061390 AFUA_8G02350 AFUB_084240 ANIA_06448 ANIA_08383 ATEG_03629 ATEG_10080 Fung023 NFIA_096030
−
&& 25.R-PKS_I(1) && ACLA_043440 ACLA_055790 AFLA_053870 AFLA_080490 AFLA_105450 AFLA_118940 AFLA_126710 AFUA_1G01010 AFUA_3G14700 AFUB_034520 AFUB_045640 An01g06930 An02g09430 An03g06380 An07g01030 An09g01290 An09g05340 An11g05570 An12g02670 ANIA_03612 ANIA_06431 ANIA_08910 ANIA_09005 AO090005000798 AO090009000071 AO090010000402 AO090038000210 ATEG_06680 ATEG_08172 ATEG_09100 Fung005 Fung027 Fung046 Fung047 NFIA_004080 NFIA_057360 NFIA_062550
+
R-PKS 2&& 25.R-PKS_I(1) && ACLA_043440 ACLA_055790 AFLA_053870 AFLA_080490 AFLA_105450 AFLA_118940 AFLA_126710 AFUA_1G01010 AFUA_3G14700 AFUB_034520 AFUB_045640 An01g06930 An02g09430 An03g06380 An07g01030 An09g01290 An09g05340 An11g05570 An12g02670 ANIA_03612 ANIA_06431 ANIA_08910 ANIA_09005 AO090005000798 AO090009000071 AO090010000402 AO090038000210 ATEG_06680 ATEG_08172 ATEG_09100 Fung005 Fung027 Fung046 Fung047 NFIA_004080 NFIA_057360 NFIA_062550
 
&& 26.R-PKS_I(2) && AFLA_137870 AFUA_8G00370 AFUB_086200 An01g01130 An01g06950 An15g05090 ANIA_07084 AO090011000015 AO090026000149 ATEG_01894 ATEG_04718 ATEG_06056 Fung048 Fung049 Fung050 Fung084 NFIA_023490 NFIA_093790 NFIA_093910
 
&& 26.R-PKS_I(2) && AFLA_137870 AFUA_8G00370 AFUB_086200 An01g01130 An01g06950 An15g05090 ANIA_07084 AO090011000015 AO090026000149 ATEG_01894 ATEG_04718 ATEG_06056 Fung048 Fung049 Fung050 Fung084 NFIA_023490 NFIA_093790 NFIA_093910
−
&& 27.6-MSAS_I && ACLA_042410 AFLA_002900 AFUA_6G13930 AFUB_000820 An04g04340 An11g09720 ANIA_01784 AO090102001066 ATEG_09617 NFIA_100520
+
6-MSAS/NRPS-PKS 7&& 27.6-MSAS_I && ACLA_042410 AFLA_002900 AFUA_6G13930 AFUB_000820 An04g04340 An11g09720 ANIA_01784 AO090102000166 ATEG_09617 NFIA_100520
−
&& 28.NRPS-PKS_I && AFLA_010000 AO09010300024
+
&& 28.NRPS-PKS_I && AFLA_010000 AO090103000224
 
&& 29.NRPS-PKS_II && ACLA_077660 An08g03790 An13g02960
 
&& 29.NRPS-PKS_II && ACLA_077660 An08g03790 An13g02960
 
&& 30.NRPS-PKS_III(Equisetin-like) && ACLA_023380 AFLA_066980 An14g01910 AO090001000293 Fung036 Fung043 Fung044 Fung055
 
&& 30.NRPS-PKS_III(Equisetin-like) && ACLA_023380 AFLA_066980 An14g01910 AO090001000293 Fung036 Fung043 Fung044 Fung055
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&& 32.NRPS-PKS_IV && ACLA_078660 ACLA_098920 AFUA_1G17740 AFUB_045790
 
&& 32.NRPS-PKS_IV && ACLA_078660 ACLA_098920 AFUA_1G17740 AFUB_045790
 
&& 33.NRPS-PKS_V && ACLA_004770 AFLA_066840 AFLA_139490 AFUA_8G00540 AFUB_086030 An02g08290 An11g06460 ANIA_08412 AO090001000277 AOry02 ATEG_00325 CpaA Fung015 Fung080 Fung086 NFIA_001530 PsoA
 
&& 33.NRPS-PKS_V && ACLA_004770 AFLA_066840 AFLA_139490 AFUA_8G00540 AFUB_086030 An02g08290 An11g06460 ANIA_08412 AO090001000277 AOry02 ATEG_00325 CpaA Fung015 Fung080 Fung086 NFIA_001530 PsoA
−
&& 34.NRPS-PKS_VI && AFLA_096770 An11g00250 An18g00520 AO090113000209 ATEG_00282
+
R-PKS 10&& 34.NRPS-PKS_VI && AFLA_096770 An11g00250 An18g00520 AO090113000209 ATEG_00282
 
&& 35.R-PKS_II && AN3610.2 ANIA_10430
 
&& 35.R-PKS_II && AN3610.2 ANIA_10430
 
&& 36.R-PKS_III && An12g07070 An13g02430 AO090020000186 ATEG_07067 Fung016 Fung025 Fung058 Fung128
 
&& 36.R-PKS_III && An12g07070 An13g02430 AO090020000186 ATEG_07067 Fung016 Fung025 Fung058 Fung128
 
&& 37.R-PKS_IV && ACLA_063030 AFLA_054090 AFUA_3G01410 AFUB_046990 AO090009000052 ATEG_09088 Fung001 NFIA_002360
 
&& 37.R-PKS_IV && ACLA_063030 AFLA_054090 AFUA_3G01410 AFUB_046990 AO090009000052 ATEG_09088 Fung001 NFIA_002360
 
&& 38.R-PKS_V && ACLA_061310 ACLA_063870 AFLA_062820 An09g01930 ANIA_01036 ANIA_02035 ANIA_06791 AO090701000826 ATEG_07659 ATEG_09968 ATer02 Fung012 Fung042 Fung072 Fung085
 
&& 38.R-PKS_V && ACLA_061310 ACLA_063870 AFLA_062820 An09g01930 ANIA_01036 ANIA_02035 ANIA_06791 AO090701000826 ATEG_07659 ATEG_09968 ATer02 Fung012 Fung042 Fung072 Fung085
−
&& 39.R-PKS_VI && ACLA_087700 ACLA_094600 AFLA_005320 AFLA_128060 AFUA_2G01290 AFUB_018370 An02g00450 An03g05140 An04g10030 An11g03920 An15g02130 An15g04140 AO090001000506 AO09003800086 Fung014 Fung037 Fung040 NFIA_033590
+
&& 39.R-PKS_VI && ACLA_087700 ACLA_094600 AFLA_005320 AFLA_128060 AFUA_2G01290 AFUB_018370 An02g00450 An03g05140 An04g10030 An11g03920 An15g02130 An15g04140 AO090001000506 AO090038000086 Fung014 Fung037 Fung040 NFIA_033590
 
&& 40.R-PKS_VII && ACLA_002670 An11g05960 An15g07920 Aspe05 ATEG_03446 ATEG_07279
 
&& 40.R-PKS_VII && ACLA_002670 An11g05960 An15g07920 Aspe05 ATEG_03446 ATEG_07279
 
&& 41.R-PKS_VIII && An11g05940 ATEG_07282 Fung041
 
&& 41.R-PKS_VIII && An11g05940 ATEG_07282 Fung041

Latest revision as of 14:41, 30 May 2012

[edit] Iterative Type I PKS Class

The Phylogeny of Ketosynthase Domain of 470 Iterative Type I PKS Genes
Phylogenetic inference was obtained with maximum-parsimony (MP) algorithms with a bootstrap test (1000 pseudo-replicates) in the MEGA package. PK-Class-IterativeTypeI.jpg
Category Class Gene IDs
FAS 01.FAS FAS_01  FAS_02  FAS_03  FAS_04  FAS_05  FAS_06  FAS_07  FAS_08  FAS_09  FAS_10   
Bacterial 02.NRPS-PKS(NFC) An14g04850  Bact04  Bact16  Bact18  Fung034  Fung097   
03a_bPR-PKS Bact03  Bact05  Bact43   
03b_bMSAS Bact06  Bact14  Bact17  Bact20  Bact36  Bact42  Bact44   
04.6-MSAS(NFC) ACLA_093660  AFLA_114820  An10g00140  AO090206000074  APar01  Aspe03  ATEG_06275  ATer01  Bact35  Bact37  Bact52  Bact58  Fung002  Fung006  Fung013  Fung035  Fung056  Fung076  Fung087   
05.Mycobacterium_2 Bact23  Bact28  Bact29  Bact31  Bact34  Bact38  Bact39  Bact40  Bact51  Bact55  Bact56  Bact57   
06.Mycobacterium_3 Bact01  Bact02  Bact24  Bact25  Bact26  Bact27  Bact32  Bact33  Bact41  Bact53  Bact54  Bact59   
07.Bacterial_PKS_mixed_species Bact07  Bact08  Bact09  Bact10  Bact11  Bact12  Bact13  Bact19  Bact21  Bact22  Bact30  Bact45  Bact46  Bact47  Bact48  Bact49  Bact50  Bact60  Bact61  Bact62  Bact63  Bact64  Bact65  Bact66  Bact67   
NR-PKS 08.NRPKS_I_(1)_OAS-Like ANIA_07909  Fung020  Fung059  Fung065  Fung066  Fung068  Fung082  Fung099  Fung112  Fung115  Fung119  Fung127  Fung129  Fung131   
09.NRPKS_I(2) ACLA_043310  AFLA_108550  AFUA_4G00210  AFUA_4G14560  AFUB_071800  AFUB_100730  An04g09530  ANIA_00150  AO090023000444  ATEG_02434  ATEG_08451  ATer06  Fung019  Fung029  Fung107  Fung110  Fung113  Fung118  Fung123  Fung124  NFIA_045430  NFIA_101660  NFIA_101810   
10.NRPKS_I(3) AFLA_060020  AFUA_7G00160  AFUB_086700  An11g07310  ANIA_06000  ANIA_07071  AO090701000530  Fung030  Fung088  Fung089  Fung134  NFIA_112240   
11.NRPKS_I(4a)melanin Fung003  Fung004  Fung007  Fung008  Fung010  Fung011  Fung017  Fung018  Fung060  Fung063  Fung067  Fung069  Fung070  Fung079  Fung081  Fung095  Fung096  Fung101  Fung102  Fung108  Fung117  Fung130  Fung132   
11.NRPKS_I(4b)melanin Fung028  Fung061  Fung064  Fung073  Fung106  Fung111   
12.NRPKS_I(5) ATEG_00145  ATer04   
13.NRPKS_I(6) Fung009  Fung120  Fung126   
14.NRPKS_I(7)Pigment-1 ACLA_076490  AFLA_006170  AFUA_2G17600  AFUB_033290  AFum01  AFum02  AFum03  AFum04  AFum05  AFum06  AFum07  An09g05730  ANIA_08209  ANid02  AO090102000545  Fung083  Fung116  Fung122  NFIA_093000   
15.NRPKS_I(8)Pigment-2 AFLA_116220  An03g05440  AO090010000048  ATEG_07500  ATer05  Fung039  Fung051  Fung054  Fung077  Fung090  Fung094  Fung104  Fung114  Fung121   
16.NRPKS_I(9) AFLA_139410  AFla01  AFla02  AFla03  AN7825  ANid01  AO090026000009  AOry01  APar02  APar03  Aspe01  Aspe02  Aspe04  Fung052  Fung057  Fung092  Fung100  Fung109  StcA   
17.NRPKS_I(10) AFLA_082150  AO090005000961  ATEG_06206  Fung038  Fung053  Fung078  Fung091  Fung093  Fung103  Fung105  Fung125   
18.NRPKS_II AFLA_112840  AFUB_079710  AO090023000877  ATEG_07379   
19.NRPKS_III(1) Fung021  Fung032  Fung033   
20.NRPKS_III(2) ACLA_008090  AFLA_127090  AFUA_3G02570  AFum08  An09g01860  ANIA_00523  AO090001000402  ATEG_03432  Fung022  Fung062  Fung074  Fung133  NFIA_003740   
21.NRPKS_III(3) AFLA_116890  An12g02050  ANIA_03386  AO090010000114  ATEG_08662   
22.NRPKS_III(4) AFLA_062860  AFLA_118960  An03g01820  ANIA_01034  ANIA_02032  ANIA_03230  AO090010000404  AO090701000831  ATEG_07661  Fung031  Fung098   
23.NRPKS_III(5) An09g02100  AO090009000131  Fung024   
24.NRPKS_III(6) ACLA_061390  AFUA_8G02350  AFUB_084240  ANIA_06448  ANIA_08383  ATEG_03629  ATEG_10080  Fung023  NFIA_096030   
R-PKS 25.R-PKS_I(1) ACLA_043440  ACLA_055790  AFLA_053870  AFLA_080490  AFLA_105450  AFLA_118940  AFLA_126710  AFUA_1G01010  AFUA_3G14700  AFUB_034520  AFUB_045640  An01g06930  An02g09430  An03g06380  An07g01030  An09g01290  An09g05340  An11g05570  An12g02670  ANIA_03612  ANIA_06431  ANIA_08910  ANIA_09005  AO090005000798  AO090009000071  AO090010000402  AO090038000210  ATEG_06680  ATEG_08172  ATEG_09100  Fung005  Fung027  Fung046  Fung047  NFIA_004080  NFIA_057360  NFIA_062550   
26.R-PKS_I(2) AFLA_137870  AFUA_8G00370  AFUB_086200  An01g01130  An01g06950  An15g05090  ANIA_07084  AO090011000015  AO090026000149  ATEG_01894  ATEG_04718  ATEG_06056  Fung048  Fung049  Fung050  Fung084  NFIA_023490  NFIA_093790  NFIA_093910   
6-MSAS/NRPS-PKS 27.6-MSAS_I ACLA_042410  AFLA_002900  AFUA_6G13930  AFUB_000820  An04g04340  An11g09720  ANIA_01784  AO090102000166  ATEG_09617  NFIA_100520   
28.NRPS-PKS_I AFLA_010000  AO090103000224   
29.NRPS-PKS_II ACLA_077660  An08g03790  An13g02960   
30.NRPS-PKS_III(Equisetin-like) ACLA_023380  AFLA_066980  An14g01910  AO090001000293  Fung036  Fung043  Fung044  Fung055   
31.6-MSAS_II_(lovastatin-like) ACLA_055680  ATEG_09961  ATer03  Fung045  Fung071  LovB   
32.NRPS-PKS_IV ACLA_078660  ACLA_098920  AFUA_1G17740  AFUB_045790   
33.NRPS-PKS_V ACLA_004770  AFLA_066840  AFLA_139490  AFUA_8G00540  AFUB_086030  An02g08290  An11g06460  ANIA_08412  AO090001000277  AOry02  ATEG_00325  CpaA  Fung015  Fung080  Fung086  NFIA_001530  PsoA   
R-PKS 34.NRPS-PKS_VI AFLA_096770  An11g00250  An18g00520  AO090113000209  ATEG_00282   
35.R-PKS_II AN3610.2  ANIA_10430   
36.R-PKS_III An12g07070  An13g02430  AO090020000186  ATEG_07067  Fung016  Fung025  Fung058  Fung128   
37.R-PKS_IV ACLA_063030  AFLA_054090  AFUA_3G01410  AFUB_046990  AO090009000052  ATEG_09088  Fung001  NFIA_002360   
38.R-PKS_V ACLA_061310  ACLA_063870  AFLA_062820  An09g01930  ANIA_01036  ANIA_02035  ANIA_06791  AO090701000826  ATEG_07659  ATEG_09968  ATer02  Fung012  Fung042  Fung072  Fung085   
39.R-PKS_VI ACLA_087700  ACLA_094600  AFLA_005320  AFLA_128060  AFUA_2G01290  AFUB_018370  An02g00450  An03g05140  An04g10030  An11g03920  An15g02130  An15g04140  AO090001000506  AO090038000086  Fung014  Fung037  Fung040  NFIA_033590   
40.R-PKS_VII ACLA_002670  An11g05960  An15g07920  Aspe05  ATEG_03446  ATEG_07279   
41.R-PKS_VIII An11g05940  ATEG_07282  Fung041   
42.R-PKS_IX ACLA_098370  Fung026  Fung075   
43.R-PKS_X An11g04280  An12g02730  AN9217.2  ANIA_02547  ANIA_07838  ANIA_11191   

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