User:Aritalab/Internal/Seminar
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| − | ==An introduction to stochastic processes with applications to biology== | + | ==Ideal, Varieties, and Algorithms [グレブナ基底と代数多様体入門] (2012 July~)== |
| − | * | + | * Chapter 1 |
| − | * | + | ** S1 [http://metabolomics.jp/mediawiki/images/a/a4/Groebner1-1.pdf Chichii] |
| − | * | + | ** S2 Kohata |
| − | * | + | ** S3 [http://metabolomics.jp/mediawiki/images/a/a5/Section1-3.pdf Hasegawa] |
| − | ** [ | + | ** S4 [[Aritalab:Lecture/Math/Ideal|Arita]] |
| − | * | + | ** S5 [http://metabolomics.jp/mediawiki/images/9/91/Groebner1_5.pdf Sato] |
| − | ** [http://metabolomics.jp/wiki/Aritalab:Lecture/NetworkBiology/BirthDeath/Continuous | + | |
| − | * | + | * Chapter 2 |
| − | * | + | ** S1 [http://metabolomics.jp/mediawiki/images/2/25/Groebner2-1.pdf Chichii] |
| − | * | + | ** S2 Kohata |
| + | ** S3 [http://www.metabolomics.jp/mediawiki/images/8/8b/Groebner_Chapter2_Sec3.pdf Hasegawa] | ||
| + | ** S4 [[Aritalab:Lecture/Math/Ideal|Arita]] | ||
| + | ** S5 Sato | ||
| + | ** S6 [http://metabolomics.jp/mediawiki/images/6/6d/Groebner_slide2-6.pdf Chichi] | ||
| + | ** S7 [http://metabolomics.jp/mediawiki/images/c/c5/Groebner_Chapter2_Sec7.pdf Hasegawa] | ||
| + | ** S8 [[Aritalab:Lecture/Math/Groebner|Arita]] | ||
| + | ** [Supplementary] [http://metabolomics.jp/mediawiki/images/8/87/Simple_applications_Groebner.pdf Applications of Groebner] | ||
| + | |||
| + | * Chapter 3 | ||
| + | ** S1 [http://metabolomics.jp/mediawiki/images/4/48/3_1.pdf Sato] | ||
| + | ** S2 [http://metabolomics.jp/mediawiki/images/a/ae/Groebner_slide3-2.pdf Chichii] | ||
| + | ** S3 [http://metabolomics.jp/mediawiki/images/f/f9/GroebnerBook_3-3.pdf Hasegawa] | ||
| + | ** S4 [http://metabolomics.jp/mediawiki/images/7/7e/3_4.pdf Sato] | ||
| + | ** S5 [[Aritalab:Lecture/Math/Resultant|Arita]] | ||
| + | ** S6 Chichii [http://metabolomics.jp/mediawiki/images/3/3c/Groebner_slide3-6_1.pdf file1] [http://metabolomics.jp/mediawiki/images/5/52/Groebner_slide3-6_2.pdf file2] | ||
| + | |||
| + | * Chapter 4 | ||
| + | ** S1 [http://metabolomics.jp/mediawiki/images/e/ea/Groebner4_1a.pdf Hasegawa] | ||
| + | ** S2 [[Aritalab:Lecture/Math/Radical|Arita]] | ||
| + | ** S3a Sato | ||
| + | ** S3b [http://metabolomics.jp/mediawiki/images/5/5a/Groebner_4_3.pdf Hasegawa] | ||
| + | ** S4 Chichii [http://metabolomics.jp/mediawiki/images/0/0a/Groebner_slide4-4_1.pdf file1] [http://metabolomics.jp/mediawiki/images/3/3b/Groebner_slide4-4_2.pdf file2] | ||
| + | ** S5 [http://metabolomics.jp/mediawiki/images/f/f6/Groebner_4_5.pdf Hasegawa] | ||
| + | ** S6 Arita | ||
| + | |||
| + | ==An introduction to stochastic processes with applications to biology (2011 April~)== | ||
| + | * S2 Discrete-Time Markov Chains | ||
| + | ** [http://metabolomics.jp/wiki/Aritalab:Lecture/NetworkBiology/Markov_Chains Arita] | ||
| + | * S3 Biological Applications of Discrete-Time Markov Chains | ||
| + | ** Kohata | ||
| + | ** Shiraishi | ||
| + | * S4 Discrete-Time Branching Processes | ||
| + | ** [http://sunflower.kuicr.kyoto-u.ac.jp/~takemoto/rindoku_Chpt4_branching_process.pdf Takemoto] | ||
| + | * S5 Continuous-Time Markov Chains | ||
| + | ** [http://sites.google.com/site/yoshihikohasegawa/data/%E8%BC%AA%E8%AA%AD5%E7%AB%A0.pdf?attredirects=0&d=1 Hasegawa] | ||
| + | * S6 Continuous-Time Birth and Death Chains | ||
| + | ** [http://metabolomics.jp/wiki/Aritalab:Lecture/NetworkBiology/BirthDeath/Continuous Arita (6.1-6.5)] | ||
| + | ** [http://sites.google.com/site/yoshihikohasegawa/data/%E8%BC%AA%E8%AA%AD6%E7%AB%A0.pdf?attredirects=0&d=1 Hasegawa (6.6-)] | ||
| + | * S7 Biological Applications of Continuous-Time Markov Chains | ||
| + | ** Kohata (7.1-7.3) | ||
| + | ** Hasegawa (7.4-7.6) | ||
| + | *** [http://sites.google.com/site/yoshihikohasegawa/data/%E8%BC%AA%E8%AA%AD7_5__7_6%E7%AB%A0.pdf?attredirects=0&d=1 PPT] | ||
| + | *** [http://sites.google.com/site/yoshihikohasegawa/data/Gillespie.nb?attredirects=0&d=1 Gillespie algorithm in Mathematica (NB)] | ||
| + | *** [http://sites.google.com/site/yoshihikohasegawa/data/Gillespie.pdf?attredirects=0&d=1 Gillespie algorithm in Mathematica (PDF)] | ||
| + | ** Hasegawa (7.7-7.8) | ||
| + | *** [http://sites.google.com/site/yoshihikohasegawa/data/%E8%BC%AA%E8%AA%AD7_7%E7%AB%A0.pdf?attredirects=0&d=1 PPT] | ||
| + | * S8 Diffusion Processes and Stochastic Differential Equations | ||
| + | ** [http://metabolomics.jp/wiki/Aritalab:Lecture/NetworkBiology/Diffusion Arita] (8.1-8.5) | ||
| + | ** [http://www.metabolomics.jp/mediawiki/images/3/3a/%E8%BC%AA%E8%AA%AD8-6_7.pdf Hasegawa] (8.6-8.7) | ||
| + | * S9 Biological Applications of Stochastic Differential Equations | ||
| + | |||
| + | ==Lectures on Toric Varieties== | ||
| + | * S0 Background | ||
| + | * S1 Toric Varieties, Lattices, and Cones | ||
Latest revision as of 19:50, 11 July 2013
[edit] Ideal, Varieties, and Algorithms [グレブナ基底と代数多様体入門] (2012 July~)
- Chapter 2
[edit] An introduction to stochastic processes with applications to biology (2011 April~)
- S2 Discrete-Time Markov Chains
- S3 Biological Applications of Discrete-Time Markov Chains
- Kohata
- Shiraishi
- S4 Discrete-Time Branching Processes
- S5 Continuous-Time Markov Chains
- S6 Continuous-Time Birth and Death Chains
- S7 Biological Applications of Continuous-Time Markov Chains
- Kohata (7.1-7.3)
- Hasegawa (7.4-7.6)
- Hasegawa (7.7-7.8)
- S8 Diffusion Processes and Stochastic Differential Equations
- S9 Biological Applications of Stochastic Differential Equations
[edit] Lectures on Toric Varieties
- S0 Background
- S1 Toric Varieties, Lattices, and Cones
