Revision as of 09:32, 23 July 2010

Terpenes

Overview

The word 'terpene' originates from turpentine, the distillation of resin from pine trees (Pinaceae). Chemically speaking, terpenes or terpenoids refer to all natural compounds build up from isoprene (C5) units. For this reason, terpenes are also called isoprenoids.
Well known terpenes include myrrh from balm trees, fragrance or essential oils of herbs and roses. Biologically, terpenes function as volatile expellant of herbivores and attractant of pollinators, or less volatile bitter antifeedants. Many hormones, pheromones and signal compounds are also derived from terpenes.

History

The German chemist Otto Wallach proposed the construction of terpenes from isoprene units known as the isoprene rule (1887), and received the Nobel Prize in Chemistry in 1910. In 1930s Leopold Ruzicka rationalized the reaction mechanisms of isoprene units and proposed the biogenetic isoprene rule, in which all compounds derived from active isoprene units should be included as terpenes. This active isoprene is now known as isopentenyl di- (or pyro-) phosphate (IPP). He received the Nobel Prize in Chemistry in 1939.

Classification

Depending on the number of isoprene units used, terpenoids are classified as follows.

• hemi-terpenes (C5)
• mono- (C10)
• sesqui- (C15)
• di- (C20)
• sester- (C25)
• tri- (C30)
• tetra- (C40)
• poly- (C5)_n (n > 8)

Biosynthesis

The common precursor of terpenes is isopentenyl diphosphate (IPP) and its isomer, dimethylallyl diphosphate (DMAPP). Both are synthesized through the mevalonate pathway (MVA pathway).

IPP		DMAPP
	IPP isomerase EC5.3.3.2

Mevalonate Pathway

In the MVA pathway, 3 molecules of acetyl CoA are first condensed to produce 3-hydroxy-3-methyl-glutaryl CoA (HMG-CoA), which is then reduced using 2 molecules of NADPH to form 3(R)-mevalonic acid (MVA). The reduction by HMG-CoA reductase is considered the rate-limiting step of IPP biosynthesis (and therefore cholesterol biosynthesis), and the well-known drugs "statin" prescribed for hypercholesterolemia　are HMG-CoA reductase inhibitors^[1]. Mevalonic acid is then twice phosphorylated by 2 molecules of ATP to form IPP.

HMG-CoA		(3R)-MVA		IPP
	HMG-CoA reductase EC1.1.1.34		kinase & decarboxylase EC2.7.4.2 & EC4.1.1.33

1. ↑ Endo A “The discovery and development of HMG-CoA reductase inhibitors” J Lipid Res 33 (11): 1569–1582, 1992

Methylerythritol-phosphate Pathway

In plants, MVA is synthesized through the methylerythritol phosphate (MEP) pathway. This pathway is also referred to as deoxyxylulose phosphate (DXP) or MVA-independent pathway, but the name "MEP" is preferred to specify the isoprenoid biosynthesis, because DXP is also known as a precursor of pyridoxal, the major form of Vitamin B6 in animal tissues (Vitamin B6 includes pyridoxal, pyridoxamine, and pyridoxine and their phosphate forms) ^[1].
Acetyl moiety from pyruvic acid is transferred onto D-glyceraldehyde 3-phosphate to form 1-deoxy-D-xylulose 5-phosphate. Then it undergoes a reverse aldol rearrangement in an enzyme-bound manner to form a branched chain compound, 2-C-methyl-D-erythritol 4-phosphate (MEP). MEP is attached by cytidine triphosphate (CTP) and its 2-hydroxyl position is phosphorylated, followed by a cyclization into 2-C-methyl-D-erythritol-2,4-cyclophosphate. IPP and DMAPP are produced from the cyclic anhydride in still unidentified enzymatic steps.

1. ↑ Tambasco-Studart M, Titiz O, Raschle T, Forster G, Amrhein N, Fitzpatrick TB “Vitamin B6 biosynthesis in higher plants” Proc Natl Acad Sci USA 102(38):13687-13692, 2005

Terpene biosynthesis

Animals and fungi lack the MEP pathway and exclusively utilize the MVA pathway in cytosol ^[1]. Plants use both pathways but selectively: IPP is turned into farnesyl diphosphate (C15) in the cytosol and the cytosol/endoplasmic reticulum boundary, and the mevalonate pathway is largely responsible for sesquiterpenoids (C15), steroids (C30), and triterpenoids (C30) ^[2]. On the other hands, enzymes related to the MEP pathway exist in plastids, and monoterpenoids (C10), diterpenoids (C20) and carotenes (C40) are synthesized mainly there ^[3][4].

• (h-t) ... head-to-tail conjugation
• (t-t) ... tail-to-tail conjugation

hemiterpenes		C5		IPP, DMAPP
		+C5 (h-t)
monoterpenes		C10		e.g. indole alkaloids, cannabinoids
		+C5 (h-t)
sesquiterpenes		C15	x2 (t-t)	C30	triterpenes		steroids
		+C5 (h-t)
diterpenes		C20	x2 (t-t)	C40	tetraterpenes		carotenoids
		+C5 (h-t)
sesterterpenes		C25

1. ↑ Boucher Y, Doolittle WF “The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways” Mol Microbiol 37(4):703-716, 2000
2. ↑ McGarvey DJ, Croteau R “Terpenoid metabolism” Plant Cell 7:1015-1026, 1995
3. ↑ Lichtenthaler HK, Schwender J, Disch A, Rohmer M. “Biosynthesis of isoprenoids in higher plant chloroplasts proceeds via a mevalonate-independent pathway” FEBS Lett 400(3):271-4, 1997
4. ↑ Turner G, Gershenzon J, Nielson EE, Froehlich JE, Croteau R “Limonene synthase, the enzyme responsible for monoterpene biosynthesis in peppermint, is localized to leucoplasts of oil gland secretory cells” Plant Physiol 120(3):879-886, 1999

Design of Di-terpene ID numbers ID番号の設計

Design of Tri-terpene ID numbers ID番号の設計

x ... species information

y ... backbone structure (母核構造) 

Symbol at y Carbons Steroids GN C17 gonane ES C18 estrane AD C19 androstane PG C21 pregnane CA C24 cholane CL C27 cholestane CM C28 campestane EG C28 ergostane SG C29 (4 rings) stigmastane PR C29 (4 rings) poriferastane

Symbol at y Carbons (Plant) Triterpenes LN C30 (4 rings) lanostane CY C30 (4 rings) cycloartane BC C30 (4 rings) baccharane CC C30 (4 rings) cucurbitane DM C30 (4 rings) dammarane HL C30 (4 rings) holostane File:Holostane .png PF C29 (5 rings) pfaffane HP C30 (5 rings) hopane LP C30 (5 rings) lupane OL C30 (5 rings) oleanane SR C30 (5 rings) serratane TR C30 (5 rings) taraxastane UR C30 (5 rings) ursane

r ... number of major rings (環構造数) 

Click above categories to see details.

h ... hydroxylation pattern (水酸基数) 

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g ... glycosylation pattern(糖修飾パターン) 

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n ... number of sugars (修飾糖数) 

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c ... serial number (通し番号)