Template:FL digit56

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m (→‎Glycosylation Patterns 糖修飾パターン)
 
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{{#lua: print("[[Image:"..string.upper(string.sub(stdin,1,1))..string.lower(string.sub(stdin,2))..".png|right|100px]]")| {{{1}}} }}
 
{{#lua: print("[[Image:"..string.upper(string.sub(stdin,1,1))..string.lower(string.sub(stdin,2))..".png|right|100px]]")| {{{1}}} }}
  
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<!---PIE chart--->
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{{FL_pie_chart|{{{1}}}}}
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{{#def:stat|
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{{#lua:
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  local T = {}
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  total = 0
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  for genus in stdin:gmatch("&&([%a]+) [-%a%. ]+&&[%a%d]+") do
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    total = total + 1
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    if (T[genus] == null) then T[genus] = 1 else T[genus] = T[genus] + 1 end
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  end
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  print(total)
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  for k,v in pairs(T) do
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    print(k.." "..v)
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  end
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|{{#SearchLine:{{{1}}}|Reference}} }}
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}}
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{|
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|-
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|
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{{#graph:pie|size=400x200;margin=0,0,0,0;title=Top 5 Families;legend=0.65x0.45;label=;
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{{#lua:
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  T = {}
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  total = 0
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  tfam = 0
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  for family, num in stdin:gmatch("([%a]+) ([%d]+)") do
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    total = total + num
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    if (T[family] == null) then T[family] = tonumber(num) tfam = tfam + 1 else T[family] = T[family] + num end
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  end
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  S = {}
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  I = {}
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  for k,v in pairs(T) do
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    if (S[v] == null) then S[v] = { k } table.insert(I,v) else table.insert(S[v], k) end
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  end
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  table.sort(I)
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  for i=table.getn(I), math.max(table.getn(I)-4,1),-1 do
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    T = S[I[i]]
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    print(table.concat(T," ").."="..I[i]*table.getn(T)..";")
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    total=total-(I[i]*table.getn(T))
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  end
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  print("others="..total)
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| {{#repeat:Stats/Family/GetFamilyName|1|{{#var:stat}}}}
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}}
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}}
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| The number in each family is counted as the number of genera (not species) listed in our registered references. Each reference record is accessible by clicking the link in compound pages. The taxonomy follows the APG-II classification. For more details, visit [[Volatile:MetaboliteDistribution|{{{1}}}|this page]].
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|}
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==Hydroxylation Patterns 水酸基パターン==
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=={{Bilingual|水酸基のパターン|Patterns of Hydroxylation}}==
 
{| class="collapsible collapsed" style="border-width:0px 0px 0px 0px;" width="60%"
 
{| class="collapsible collapsed" style="border-width:0px 0px 0px 0px;" width="60%"
 
|- style="background:#ccf"
 
|- style="background:#ccf"
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{| class="wikitable" border="1" cellpadding="1" cellspacing="1" margin: 1em 1em 1em 1em"
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{| class="wikitable" cellpadding="1" cellspacing="1" style="margin: 1em 1em 1em 1em"
 
|+ Details of the 3rd Class: Hydroxylation pattern of A and B rings (5th and 6th digits)
 
|+ Details of the 3rd Class: Hydroxylation pattern of A and B rings (5th and 6th digits)
 
|-
 
|-
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|rowspan=2 colspan=2|Position of -OH (-OCH<sub>3</sub>) groups
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|rowspan="2" colspan="2" align="center"|
 +
'''Position of -OH (-OCH<sub>3</sub>) groups'''<br/>
 +
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 6th digit &rarr;<br/>
 +
5th digit &darr;
 
|style="width:6%"| [[Image:FL___A.png|45px]]
 
|style="width:6%"| [[Image:FL___A.png|45px]]
 
|style="width:6%"| [[Image:FL___B.png|45px]]
 
|style="width:6%"| [[Image:FL___B.png|45px]]
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''O'' <small>modified with other sugars</small>;
 
''O'' <small>modified with other sugars</small>;
  
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==Other Unusual Patterns 特殊な構造==
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=={{Bilingual|その他特殊な構造|Other Unusual Patterns}}==
 
{{Twocolumn|
 
{{Twocolumn|
 
These types are not classified in the above chart.
 
These types are not classified in the above chart.
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|}
 
|}
  
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==Glycosylation Patterns 糖修飾パターン==
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=={{Bilingual|糖修飾のパターン|Patterns of Glycosylation}}==
  
 
{{Twocolumn|
 
{{Twocolumn|
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|+ Details of the 4th Class: Glycosylation patterns (7th and 8th digits)
 
|+ Details of the 4th Class: Glycosylation patterns (7th and 8th digits)
 
|-
 
|-
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|colspan=2|
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|colspan="2" align="center"| &nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 7th digit &rarr;<br/>8th digit &darr;
 
! No glycosylation {{MapLink|ListMol|{{{1}}}..N|N|}}
 
! No glycosylation {{MapLink|ListMol|{{{1}}}..N|N|}}
 
! O-glycoside {{MapLink|ListMol|{{{1}}}..G|G|}}
 
! O-glycoside {{MapLink|ListMol|{{{1}}}..G|G|}}

Latest revision as of 17:16, 18 August 2010


Contents

[edit] Major Plant Families

 The number in each family is counted as the number of genera (not species) listed in our registered references. Each reference record is accessible by clicking the link in compound pages. The taxonomy follows the APG-II classification. For details (or if the figure is broken), visit this page.

各科のカウントは種名でなく文献に記載された属名の数です。文献は代謝物ページのリンクからたどれ、分類はAPG-IIです。左の図が表示されない場合はここをクリックしてください。

[edit] Patterns of Hydroxylation

The 5th and 6th digits of our flavonoid ID indicates the hydroxylation patterns of A-ring and B-ring (See the upper-right figure. The leftmost ring is A, rightmost is B), respectively. The following chart is spanned by these 2 digits. R indicates H or CH3, and R' indicates H or R. Numbers are IUPAC positions. The value in each cell (such as GS: glycosilation only) corresponds to the 7th and 8th digits, which is explained at the bottom of this page.


Details of the 3rd Class: Hydroxylation pattern of A and B rings (5th and 6th digits)

Position of -OH (-OCH3) groups
      6th digit →
5th digit ↓

FL A.png FL B.png FL C.png FL D.png FL E.png FL F.png FL G.png FL H.png FL I.png FL J.png FL K.png FL L.png FL 8.png FL 9.png
 A (0 pages)  B (0 pages)  C (0 pages)  D (0 pages)  E (0 pages)  F (0 pages)  G (0 pages)  H (0 pages)  I (0 pages)  J (0 pages)  K (0 pages)  L (0 pages)  8 (0 pages)  9 (0 pages)
FL A .png  A (0 pages)
FL B .png  B (0 pages)
FL C .png  C (0 pages)
FL D .png  D (0 pages)
FL E .png  E (0 pages)
FL F .png  F (0 pages)
FL G .png  G (0 pages)
FL 1 .png  1 (0 pages)
FL 2 .png  2 (0 pages)
FL 3 .png  3 (0 pages)
FL 4 .png  4 (0 pages)
FL 9 .png  9 (0 pages)

Abbreviations used in the above chart

First Characters 

N not glycosylated; G O-glycoside; C C-glycoside; D both glycosides;

Second Characters 

S not modified; M alkylated; I prenylated; R cyclic-prenylated; F furanoFL; P pyranoFL; D furano and pyranoFL; N phenylpropanoid; C others;

Special Second Character only for Anthycyanin (FL7) 

A Galactosylated; L Glucosylated; O modified with other sugars;

[edit] Other Unusual Patterns

These types are not classified in the above chart.

Quinone  QU (0 pages) alpha-Hydroxy  HX (0 pages) beta-Hydroxy  HY (0 pages) Peltogynoid  PT (0 pages)
Retrocalchone  RT (0 pages) Dehydro-backbone  WX (0 pages) Additional rings  RN (0 pages) Others  UN (0 pages)
Pyranoanthocyanin (FL7 only)  RX (0 pages)

[edit] Patterns of Glycosylation

The 7th and 8th digits of the flavonoid ID indicates the glycosylation, and other modification patterns, respectively. The following chart is spanned by these 2 digits. The value in each cell (such as AA for the standard form) corresponds to the 5th and 6th digits.


Details of the 4th Class: Glycosylation patterns (7th and 8th digits)
      7th digit →
8th digit ↓ 		No glycosylation  N (0 pages) O-glycoside  G (0 pages) C-glycoside  C (0 pages) O- & C-glycoside  D (0 pages)
no modification  S (0 pages)
alkylated  M (0 pages)
prenylated  I (0 pages)
cyclic prenylated  R (0 pages)
furano FL  F (0 pages)
pyrano FL  P (0 pages)
furano & pyrano FL  D (0 pages)
prenylpropanoid  N (0 pages)
others  C (0 pages)
3-Gal related A N.A. N.A. N.A.
3-Glc related L N.A. N.A. N.A.
other sugar at 3 O N.A. N.A. N.A.
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