PKS:Fung008

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|CDD=KS-AT-PP-PP-TE
 
|CDD=KS-AT-PP-PP-TE
 
|class=NRPKS
 
|class=NRPKS
−
|reliability=putative
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|reliability=identified
 
|description=polyketide synthase 1 [Glarea lozoyensis]
 
|description=polyketide synthase 1 [Glarea lozoyensis]
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|information=required for melanin synthesis
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|information=required for melanin synthesis.Inferred domain architecture: SAT-KS-AT-PT-ACP-ACP-TE/CLC
 
|length=2124
 
|length=2124
−
|references=\*Varga.+2003$~\*Valarmathi.+2009$~\*Fisch.+2009$~\*Li.+2010$
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|references=\*Varga.+2003$~\*Valarmathi.+2009$~\*Fisch.+2009$~\*Li.+2010$~\*Ahuja.+2012$~\*Zhang.+2003$
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}}
 
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{{{{NAMESPACE}}/Footer}}
 
{{{{NAMESPACE}}/Footer}}

Latest revision as of 01:16, 10 May 2012

Polyketide Top Species List UniRef90 Class UniRef50 Class Gene Class Domains
(by CDD) 		Domains
(by MAPSI)
Glarea lozoyensis (GenBank AAN59953) all species
Class NRPKS (length: 2124) all classes   Class 11.NRPKS_I(4a)melanin in KS domain phylogeny Reliability identified
Product melanin GeneName pks1
UniProt,UniRef90 [1] , [2] UniRef50 [3]
Domain by MAPSI KS-AT-ACP-ACP-CYC

(notation help / all patterns)

Domain by CDD KS-AT-PP-PP-TE

(notation help / all patterns)

Domain by ITER-DB {{{ITERDB}}}

(notation help / all patterns)

Estimated Domain
Description polyketide synthase 1 [Glarea lozoyensis]
Information required for melanin synthesis.Inferred domain architecture: SAT-KS-AT-PT-ACP-ACP-TE/CLC
References
  • Ahuja M, Chiang YM, Chang SL, Praseuth MB, Entwistle R, Sanchez JF, Lo HC, Yeh HH, Oakley BR, Wang CC: Illuminating the diversity of aromatic polyketide synthases in aspergillus nidulans. J Am Chem Soc, 2012
  • Fisch KM, Gillaspy AF, Gipson M, Henrikson JC, Hoover AR, Jackson L, Najar FZ, Wagele H, Cichewicz RH: Chemical induction of silent biosynthetic pathway transcription in aspergillus niger. J Ind Microbiol Biotechnol 36(9):1199-1213, 2009
  • Li Y, Image, II, Xu W, Image I, Tang Y: Classification, prediction, and verification of the regioselectivity of fungal polyketide synthase product template domains. J Biol Chem 285(30):22764-22773, 2010
  • Valarmathi R, Hariharan GN, Venkataraman G, Parida A: Characterization of a non-reducing polyketide synthase gene from lichen dirinaria applanata. Phytochemistry 70(6):721-729, 2009
  • Varga J, Rigo K, Kocsube S, Farkas B, Pal K: Diversity of polyketide synthase gene sequences in Aspergillus species. Res Microbiol 154:593-600, 2003
  • Zhang A, Lu P, Dahl-Roshak AM, Paress PS, Kennedy S, Tkacz JS and An Z: Efficient disruption of a polyketide synthase gene ( pks1) required for melanin synthesis through agrobacterium-mediated transformation of glarea lozoyensis. Mol Genet Genomics 268(5):645-655, 2003
Link AspGD

This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)

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