PKS:An18g00520

From Metabolomics.JP
Revision as of 17:50, 12 April 2012 by Adm (Talk | contribs)

Jump to: navigation, search
Polyketide Top Species List UniRef90 Class UniRef50 Class Gene Class Domains
(by CDD)
Domains
(by MAPSI)
Aspergillus niger CBS 513.88 (GenBank XP_001398521) all species
Class NRPS-PKS (length: 3860) all classes   Class 34.NRPS-PKS_VI in KS domain phylogeny Reliability
Product GeneName
UniProt,UniRef90 A2R9X2 , UniRef90_G7XYT5 UniRef50 UniRef50_G7XYT5
Domain by MAPSI KS-AT-DH-ER-KR-ACP

(notation help / all patterns)

Domain by CDD KS-AT-DH-ER-KR-PP-Con-AAA-PP-KR

(notation help / all patterns)

Domain by ITER-DB {{{ITERDB}}}

(notation help / all patterns)

Estimated Domain
Description hypothetical protein An18g00520 [Aspergillus niger]
Information Possible NRPS-PKS domain structure:KS-AT-DH-CAP (Title: strong similarity to polyketide synthase PKS1 - Cochliobolus heterostrophus; Function: the C. heterostrophus PKS1 gene product is a multifunctional polyketide synthase with six catalytic domains: beta-ketoacyl synthase-acyltransferase-dehydratase-enoyl reductase-beta-ketoacyl reductase-and acyl carrier protein involved in production of T-toxin.)
References
  • Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wosten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H: Genome sequencing and analysis of the versatile cell factory aspergillus niger cbs 513.88. Nat Biotechnol 25(2):221-231, 2007
Link AspGD

This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)

Personal tools
Namespaces

Variants
Actions
Navigation
metabolites
Toolbox