PKS:AN7071

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(update information (gene cluster) and reference)
 
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|species=Aspergillus nidulans FGSC A4
 
|species=Aspergillus nidulans FGSC A4
 
|taxonomy=Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Pezizomycotina; Leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Emericella
 
|taxonomy=Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Pezizomycotina; Leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Emericella
|product=
+
|product=alternariol, dehydrocitreoisocoumarin,  dehydrocitreoisocoumarin, 6, 8-dihydroxy-3-(2-oxopropyl)-isocoumarin, 6, 8-dihydroxy-3-(2-hyfroxy-propyl)-isocoumarin
 
|GenBank=XP_664675
 
|GenBank=XP_664675
 
|UniProt=C8VB30
 
|UniProt=C8VB30
 
|UniRef90=C8VB30
 
|UniRef90=C8VB30
 
|UniRef50=Q2U886
 
|UniRef50=Q2U886
|geneName=pks12
+
|geneName=pks12(pkgA)
 
|MAPSI=KS-AT-ACP
 
|MAPSI=KS-AT-ACP
 
|CDD=KS-AT-(PP)
 
|CDD=KS-AT-(PP)
 +
|ITERDB=KS-AT-ACP
 +
|InferredDomain=SAT-KS-AT-PT-ACP
 
|class=NRPKS
 
|class=NRPKS
|reliability=putative
+
|reliability=verified
 
|description=hypothetical protein AN7071.2 [Aspergillus nidulans FGSC A4]
 
|description=hypothetical protein AN7071.2 [Aspergillus nidulans FGSC A4]
|information=
+
|information=The PP domain of AN7071 from CCD is incomplete.
 
|length=1870
 
|length=1870
|references=\*Li.+2010$
+
|references=\*Li.+2010$~\*Ahuja.+2012$~\*Andersen.+2013$
 
}}
 
}}
 
{{{{NAMESPACE}}/Footer}}
 
{{{{NAMESPACE}}/Footer}}

Latest revision as of 13:12, 28 March 2013

Polyketide Top Species List UniRef90 Class UniRef50 Class Gene Class Domains
(by CDD)
Domains
(by MAPSI)
Aspergillus nidulans FGSC A4 (GenBank XP_664675) all species
Class NRPKS (length: 1870) all classes   Class in KS domain phylogeny Reliability verified
Product alternariol, dehydrocitreoisocoumarin, dehydrocitreoisocoumarin, 6, 8-dihydroxy-3-(2-oxopropyl)-isocoumarin, 6, 8-dihydroxy-3-(2-hyfroxy-propyl)-isocoumarin GeneName pks12(pkgA)
UniProt,UniRef90 C8VB30 , C8VB30 UniRef50 Q2U886
Domain by MAPSI KS-AT-ACP

(notation help / all patterns)

Domain by CDD KS-AT-(PP)

(notation help / all patterns)

Domain by ITER-DB KS-AT-ACP

(notation help / all patterns)

Estimated Domain SAT-KS-AT-PT-ACP
Description hypothetical protein AN7071.2 [Aspergillus nidulans FGSC A4]
Information The PP domain of AN7071 from CCD is incomplete.
References
  • Ahuja M, Chiang YM, Chang SL, Praseuth MB, Entwistle R, Sanchez JF, Lo HC, Yeh HH, Oakley BR, Wang CC: Illuminating the diversity of aromatic polyketide synthases in aspergillus nidulans. J Am Chem Soc, 2012
  • Andersen M R, Nielsen J B, Klitgaard A, Petersen L M, Zachariasen M, Hansen T J, Blicher L H, Gotfredsen C H, Larsen T O, Nielsen K F, Mortensen U H: Accurate prediction of secondary metabolite gene clusters in filamentous fungi. Proc Natl Acad Sci U S A 110(1): E99-107. 2013
  • Li Y, Image, II, Xu W, Image I, Tang Y: Classification, prediction, and verification of the regioselectivity of fungal polyketide synthase product template domains. J Biol Chem 285(30):22764-22773, 2010
Link AspGD

This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)

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