PKS:AN1036

From Metabolomics.JP
(Difference between revisions)
Jump to: navigation, search
(update information (gene cluster) and reference)
 
Line 3: Line 3:
 
|species=Aspergillus nidulans FGSC A4
 
|species=Aspergillus nidulans FGSC A4
 
|taxonomy=Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Pezizomycotina; Leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Emericella
 
|taxonomy=Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Pezizomycotina; Leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Emericella
|product=
+
|product=asperfuranone
 
|GenBank=XP_658640
 
|GenBank=XP_658640
 
|UniProt=C8VTX6
 
|UniProt=C8VTX6
Line 12: Line 12:
 
|CDD=KS-AT-DH-ME-ER-KR-PP
 
|CDD=KS-AT-DH-ME-ER-KR-PP
 
|class=RPKS
 
|class=RPKS
|reliability=Verified
+
|reliability=verified
 
|description=hypothetical protein AN1036.2 [Aspergillus nidulans FGSC A4]
 
|description=hypothetical protein AN1036.2 [Aspergillus nidulans FGSC A4]
|information=
+
|information=Putative polyketide synthase; required for asperfuranone biosynthesis; transcriptionally induced by scrP overexpression
 
|length=2527
 
|length=2527
 
|references=\*Castoe.+2007$~\*Fisch.+2009$~\*Andersen.+2013$
 
|references=\*Castoe.+2007$~\*Fisch.+2009$~\*Andersen.+2013$
 
}}
 
}}
 
{{{{NAMESPACE}}/Footer}}
 
{{{{NAMESPACE}}/Footer}}

Latest revision as of 12:58, 28 March 2013

Polyketide Top Species List UniRef90 Class UniRef50 Class Gene Class Domains
(by CDD)
Domains
(by MAPSI)
Aspergillus nidulans FGSC A4 (GenBank XP_658640) all species
Class RPKS (length: 2527) all classes   Class in KS domain phylogeny Reliability verified
Product asperfuranone GeneName afoG
UniProt,UniRef90 C8VTX6 , C8VTX6 UniRef50 C8VTX6
Domain by MAPSI KS-AT-DH-ER-KR-ACP

(notation help / all patterns)

Domain by CDD KS-AT-DH-ME-ER-KR-PP

(notation help / all patterns)

Domain by ITER-DB {{{ITERDB}}}

(notation help / all patterns)

Estimated Domain
Description hypothetical protein AN1036.2 [Aspergillus nidulans FGSC A4]
Information Putative polyketide synthase; required for asperfuranone biosynthesis; transcriptionally induced by scrP overexpression
References
  • Andersen M R, Nielsen J B, Klitgaard A, Petersen L M, Zachariasen M, Hansen T J, Blicher L H, Gotfredsen C H, Larsen T O, Nielsen K F, Mortensen U H: Accurate prediction of secondary metabolite gene clusters in filamentous fungi. Proc Natl Acad Sci U S A 110(1): E99-107. 2013
  • Castoe TA, Stephens T, Noonan BP, Calestani C: A novel group of type I polyketide synthases (PKS) in animals and the complex phylogenomics of PKSs. Gene 392:47-58, 2007
  • Fisch KM, Gillaspy AF, Gipson M, Henrikson JC, Hoover AR, Jackson L, Najar FZ, Wagele H, Cichewicz RH: Chemical induction of silent biosynthetic pathway transcription in aspergillus niger. J Ind Microbiol Biotechnol 36(9):1199-1213, 2009
Link AspGD

This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)

Personal tools
Namespaces

Variants
Actions
Navigation
metabolites
Toolbox