Main Page

Latest revision as of 17:09, 13 March 2014

Arita Laboratory has moved to National Institute of Genetics.　More...

[edit] Contents

[edit] Flavonoid Database

Flavonoids such as catechin, anthocyanin, flavan are important for our health (6961 data now).

(compilation with NAIST)

[edit] Basic Metabolites

Basic metabolites include organic and amino acids, DNAs, and other essential metabolites (1948 data now).

BM top

(not ready. will be organized soon)

Plants

Plants top
Plant orders
Plant families
For each genus (3961 genera now), input a genus name as in Species:Arabidopsis.

Crude Drug/Kampo

(with NAIST & Toyama Univ.)

Links

Allied DB : KNApSAcK : MassBank : LipidBank

Spectral DB : HMDB : NIST Chemistry WebBook : NIST Library search program : SDBS : SpectroscopyNow : UK Chemical DB Service : Univ Wisconsin BioMagResBank : Univ. Alberta MS library : Univ. Georgia Complex Carbohydrate DB : Univ. Pennsylvania ChemPen Project

Chemical DB : ChemFinder : CTFile format : Daylight Documentation : Merck online catalog : NCI database : PubChem : ZINC

Pathway DB : BioCarta : Biochemical Pathways : BioCyc : KEGG : Univ. Minnesota BBD : KaPPA-View : MapMan : TAIR

Natural Compound DB : AU techno-service Co. : Encyclopaedia of Plant Metabolites : Pherobase

Genome DB : MBGD: Microbial Genome Database : Genobase : Sol genomics network

@@ Line 1: / Line 1: @@
-<!----
-{| style="float:right;background-color:transparent;border-style:none;border-collapse:collapse"
-|-
-|HEADER
-|-
-| SUBHEADER
-|}
----->
 __NOTOC__
+{{#def:LANG|{{#getenv:LANG}}}}
-Notice: This site is written both in English and Japanese.
+[[User:Aritalab|{{Bilingual|東京大学・有田研究室は、国立遺伝学研究所に異動しました。|Arita Laboratory has moved to National Institute of Genetics.}}]]　[[Help:Contents|More...]]
-==What is Metabolomics?==
-{{Twocolumn|
-''Metabolomics'' is a research field to investigate the entire chemical compounds within cells.  The analysis target, all metabolites, is called ''metabolome''. Some say the field is be the 3rd omics that follows genomics for all genes and proteomics for all proteins. However, metabolomics is a much larger concept because DNAs, amino acids, and peptides are all metabolites. {{WrittenBy|Masanori Arita}}
-|
-細胞内の代謝物を網羅的に解析しようとする学問分野を「メタボロミクス」と呼び、その対象である全代謝物を「メタボローム」と呼びます。遺伝子の総体を研究するゲノミクス、タンパク質の総体を研究するプロテオミクスに続く、第三のオミクスとも言われますが、DNAやアミノ酸、ペプチドも代謝物であることから、メタボロミクスは全てを包括する概念です。
-}}
-<br style="clear:both" />
+==Contents==
 {| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
-| style="width:50%;vertical-align:top;padding-right:0.2em" |
+|-
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #060;margin:0.2em;padding:0.2em">[[:Category:FL|{{Large|FL}}<big>avonoids</big>]] フラボノイド</h2>
+|style="width:45%;vertical-align:top;padding-left:0.2em" |
-{| style="background-color:transparent;border-style:none;border-collapse:collapse"
+===<span style="border-bottom:3px solid #060">{{Bilingual|フラボノイド データベース|Flavonoid Database}}</span>===
+{| style="border-style:none;border-collapse:collapse"
 |-
 | style="vartical-align:top" |
 | [[Image:Leaf.jpg]]
 | style="vartical-align:top" |
-<p>
 Flavonoids such as catechin, anthocyanin, flavan are important for our health ({{#countTitle:FL|}} data now).
-* [[:Category:FL|Flavonoid top トップ]]
+* [[:Category:FL|{{bilingual|トップ|Flavonoid top}}]]
-* [[Index:FL|Index by name/weight/formula 索引]]
+* [[Index:FL    |{{bilingual|索引|Index by name/weight/formula}}]]
-* [[Index:Journal_Titles|Journals reporting flavonoid ジャーナル]]
+* [[Index:Journal_Titles|{{bilingual|ジャーナル|Journals reporting flavonoid}}]]
 (compilation with [http://kanaya.naist.jp/KNApSAcK/ NAIST])
-</p>
 |}
-| style="width:50%;vertical-align:top;padding-left:0.2em" |
+|style="width:45%;vertical-align:top;padding-left:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #a00;margin:0.2em;padding:0.2em">{{Large|B}}<big>asic</big> {{Large|M}}<big>etabolism</big> 基礎代謝</h2>
+===<span style="border-bottom:3px solid #a00">{{Bilingual|基礎代謝物|Basic Metabolites}}</span>===
-{| style="background-color:transparent;border-style:none;border-collapse:collapse"
+{| style="border-style:none;border-collapse:collapse"
 |-
 | style="vartical-align:top" |
 <p>
-Basic metabolites include organic and amino acids (アミノ酸), DNAs, and other essential metabolites ({{#countTitle:BM|}} data now).
+{{Bilingual
+|基礎代謝物とは、有機酸、アミノ酸、核酸、その他生命に必要な代謝物を意味します。 ({{#countTitle:BM|}} 物質)
+|Basic metabolites include organic and amino acids, DNAs, and other essential metabolites ({{#countTitle:BM|}} data now).}}
-* [[:Category:BM|BM top page トップページ]]
+* [[:Category:BM|{{bilingual|トップ|BM top}}]]
 <!---
-* [[Index:BM|Index by weight/formula]]
+* [[Index:BM|{{bilingual|索引|Index by weight/formula}}]]
 --->
 </p>
@@ Line 53: / Line 42: @@
 <small>(not ready. will be organized soon)</small>
 |}
 |}
 {| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
 | style="width:50%;vertical-align:top;padding-left:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[Index:PS|{{Large|P}}<big>lants</big>]] 植物</h2>
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[Index:PS|{{Large|P}}<big>lants</big>]] {{bilingual|植物 データベース|}}</h2>
 {| style="background-color:transparent;border-style:none;border-collapse:collapse"
 |-
@@ Line 65: / Line 56: @@
 | style="vartical-align:top" |
 <p>
-* [[Index:PS|Plants top トップ]]
+* [[Index:PS|{{bilingual|トップ|Plants top}}]]
-* [[Index:PlantSpecies/Order|Plant orders 目名一覧]]
+* [[Index:PlantSpecies/Order|{{bilingual|目名一覧|Plant orders}}]]
-* [[Persist:PlantFamilyList|Plant families 科名一覧]]
+* [[Persist:PlantFamilyList|{{bilingual|科名一覧|Plant families}}]]
-* To access each genus ({{#countTitle:.*|Species}} genera now), please type <br/>
+* {{bilingual|植物の情報（現在{{#countTitle:.*|Species}}属）はアドレスに[[Species:Arabidopsis]] のように属名を入れてください。|For each genus ({{#countTitle:.*|Species}} genera now), input a genus name as in [[Species:Arabidopsis]].}}
-<nowiki>...wiki/Species:GENUS_NAME</nowiki>.
 </p>
 |}
@@ Line 75: / Line 66: @@
 | style="width:50%;vertical-align:top;padding-left:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[:Category:CD|{{Large|C}}<big>rude</big> {{Large|D}}<big>rug/Kampo</big>]] 漢方</h2>
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[:Category:CD|{{Large|C}}<big>rude</big> {{Large|D}}<big>rug/Kampo</big>]] {{bilingual|漢方・生薬 データベース|}}</h2>
 {| style="background-color:transparent;border-style:none;border-collapse:collapse"
 |-
 | style="vartical-align:middle" |
-| [[Image:Crudedrug.jpg]]
+| [[Image:Crudedrug.jpg|50px]]
 | style="vartical-align:top" |
 <p>
-* [[:Category:CD|Crude Drug top トップ]]
+* [[:Category:CD|{{bilingual|トップ|Crude Drug top}}]]
-* [[Index:CD|General index 生薬総索引]]
+* [[Index:CD|{{bilingual|総索引|General index}}]]
-* [[Persist:CrudeDrugList|Crude Drug index 生薬一覧]]
+* [[Persist:CrudeDrugList|{{bilingual|生薬一覧|Crude Drug index}}]]
-* [[Persist:KampoList|Prescription index 処方一覧]]
+* [[Persist:KampoList|{{bilingual|処方一覧|Prescription index}}]]
-* [[Persist:KampoReference|Kampo books 文献一覧]]
+* [[Persist:KampoReference|{{bilingual|文献一覧|Kampo books}}]]
 (with [http://kanaya.naist.jp/KNApSAcK/ NAIST] & [http://www.inm.u-toyama.ac.jp/index-j.html Toyama Univ.])
 </p>
@@ Line 92: / Line 83: @@
 |}
+<br style="clear:both" />
 {| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
-| style="width:50%;vertical-align:top;padding-right:0.2em" |
+|
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #c00;margin:0.2em;padding:0.2em">{{Large|A}}<big>bout this site</big></h2>
-{| style="background-color:transparent;border-style:none;border-collapse:collapse"
-|-
-| style="vartical-align:top" |
-<p>Metabolomics.JP is a companion website of [http://metabolome.jp/ Metabolome.JP], both operated by Arita Group (The Univ of Tokyo & PSC) in collaboration with Nishioka Group (Keio Univ) and Kanaya Group (NAIST).  These sites provide our academic research results as well as useful metabolic information around us. ([[Help:Contents|More...]])<BR/>
-このサイトは東京大学の有田研究室が運営する研究&一般向けウェブサイトです。身の回りの代謝情報も掲載しています。([[Help:Contents|詳細]])
-研究室の情報や代謝のトリビアについては[http://metabolome.jp/ こちらのサイト]をご覧ください。</p>
-|}
-| style="width:50%;vertical-align:top;padding-left:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #aa0;margin:0.2em;padding:0.2em">{{Large|N}}<big>ews Topics</big></h2>
-<div style="margin:0.1em;padding:0.1em 0.5em">
-* げのむひろばで展示していた代謝マップは[http://www.metabolome.jp/doc/map ここ]にあります。
-* 植物データの[[Index:Atomi|跡見群芳譜]]をリンクに加えました。
-*
-* [[Index:MassBank|Testing site of MassBank Data]] ... Browse the MassBank spectral annotations
-</div>
-|}
-<br style="clear:both" />
-{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
-|
 <h2 style="font-size:100%;text-align:left;border-bottom:3px solid #CC6600;margin:0.2em;padding:0.2em">{{Large|L}}<big>inks</big></h2>

Main Page

Latest revision as of 17:09, 13 March 2014

[edit] Contents

[edit] Flavonoid Database

[edit] Basic Metabolites

Plants

Crude Drug/Kampo

Links

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