Main Page

Latest revision as of 17:09, 13 March 2014

Arita Laboratory has moved to National Institute of Genetics.　More...

[edit] Contents

[edit] Flavonoid Database

Flavonoids such as catechin, anthocyanin, flavan are important for our health (6961 data now).

(compilation with NAIST)

[edit] Basic Metabolites

Basic metabolites include organic and amino acids, DNAs, and other essential metabolites (1948 data now).

BM top

(not ready. will be organized soon)

Plants

Plants top
Plant orders
Plant families
For each genus (3961 genera now), input a genus name as in Species:Arabidopsis.

Crude Drug/Kampo

(with NAIST & Toyama Univ.)

Links

Allied DB : KNApSAcK : MassBank : LipidBank

Spectral DB : HMDB : NIST Chemistry WebBook : NIST Library search program : SDBS : SpectroscopyNow : UK Chemical DB Service : Univ Wisconsin BioMagResBank : Univ. Alberta MS library : Univ. Georgia Complex Carbohydrate DB : Univ. Pennsylvania ChemPen Project

Chemical DB : ChemFinder : CTFile format : Daylight Documentation : Merck online catalog : NCI database : PubChem : ZINC

Pathway DB : BioCarta : Biochemical Pathways : BioCyc : KEGG : Univ. Minnesota BBD : KaPPA-View : MapMan : TAIR

Natural Compound DB : AU techno-service Co. : Encyclopaedia of Plant Metabolites : Pherobase

Genome DB : MBGD: Microbial Genome Database : Genobase : Sol genomics network

@@ Line 1: / Line 1: @@
-{| style="float:right;background-color:transparent;border-style:none;border-collapse:collapase"
-|-
-|HEADER
-|-
-| SUBHEADER
-|}
 __NOTOC__
-<br style="clear:both" />
+{{#def:LANG|{{#getenv:LANG}}}}
-{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapase"
-|-
-| style="width:50%;vertical-align:top;padding-right:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #060;margin:0.2em;padding:0.2em">{{Large|W}}{{Big|hat is Metabolomics.JP?}}</h2>
-{| style="background-color:transparent;border-style:none;border-collapse:collapase"
-|-
-| style="vartical-align:top" |
-|
-| style="vartical-align:top" |
-<p>Metabolomics.JP is a companion website of [http://metabolome.jp/ Metabolome.JP], both operated by Arita Group (The Univ of Tokyo) in collaboration with Nishioka Group (Keio Univ) and Kanaya Group (NAIST).  These sites provide our academic research results as well as useful metabolic information around us. ([[Doc:About|More...]])<BR>
-このサイトは東京大学の有田研究室が運営する研究&一般向けウェブサイトです。身の回りの代謝情報も掲載しています。([[Doc:About|詳細]])<BR>
-</p>
-|}
-| style="width:50%;vertical-align:top;padding-left:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #060;margin:0.2em;padding:0.2em">{{Large|N}}{{Big|ews Topics}}</h2>
+[[User:Aritalab|{{Bilingual|東京大学・有田研究室は、国立遺伝学研究所に異動しました。|Arita Laboratory has moved to National Institute of Genetics.}}]]　[[Help:Contents|More...]]
-<div style="margin:0.1em;padding:0.1em 0.5em">
-* Workshop/Meeting Information
-** [http://prime.psc.riken.jp/icpm2008/ 5th International Conference on Plant Metabolomics (ICPM)] Jul 15-18, 2008
-*Job Opportunities
-**
-</div>
-|}
-<br style="clear:both" />
-{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapase"
-|- <!--- SECOND ROW --->
-| style="width:50%;vertical-align:top;padding-right:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">{{Large|FL}}{{Big|avonoid Information}} フラボノイド</h2>
+==Contents==
-{| style="background-color:transparent;border-style:none;border-collapse:collapase"
+{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
+|-
+|style="width:45%;vertical-align:top;padding-left:0.2em" |
+===<span style="border-bottom:3px solid #060">{{Bilingual|フラボノイド データベース|Flavonoid Database}}</span>===
+{| style="border-style:none;border-collapse:collapse"
 |-
 | style="vartical-align:top" |
 | [[Image:Leaf.jpg]]
 | style="vartical-align:top" |
-<p>
+Flavonoids such as catechin, anthocyanin, flavan are important for our health ({{#countTitle:FL|}} data now).
-Currently, {{#countTitle:FL|}} structures are classified under FL category.
-* [[:Category:FL|About FL Category]]
+* [[:Category:FL|{{bilingual|トップ|Flavonoid top}}]]
-* [[Index:FL|Index by weight/formula]]
+* [[Index:FL    |{{bilingual|索引|Index by name/weight/formula}}]]
-* [[Index:Journal_Titles|Journals reporting flavonoids]]
+* [[Index:Journal_Titles|{{bilingual|ジャーナル|Journals reporting flavonoid}}]]
-</p>
+(compilation with [http://kanaya.naist.jp/KNApSAcK/ NAIST])
 |}
-| style="width:50%;vertical-align:top;padding-left:0.2em" |
+|style="width:45%;vertical-align:top;padding-left:0.2em" |
+===<span style="border-bottom:3px solid #a00">{{Bilingual|基礎代謝物|Basic Metabolites}}</span>===
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #a00;margin:0.2em;padding:0.2em">{{Large|B}}{{Big|asic}} {{Large|M}}{{Big|etabolism}}</h2>
+{| style="border-style:none;border-collapse:collapse"
-{| style="background-color:transparent;border-style:none;border-collapse:collapase"
 |-
 | style="vartical-align:top" |
 <p>
-Basic metabolites include organic and amino acids, DNAs, and other essential metabolites.  Currently, {{#countTitle:BM|}} structures are classified under BM category.
+{{Bilingual
+|基礎代謝物とは、有機酸、アミノ酸、核酸、その他生命に必要な代謝物を意味します。 ({{#countTitle:BM|}} 物質)
+|Basic metabolites include organic and amino acids, DNAs, and other essential metabolites ({{#countTitle:BM|}} data now).}}
-* [[:Category:BM|About BM Category]]
+* [[:Category:BM|{{bilingual|トップ|BM top}}]]
 <!---
-* [[Index:BM|Index by weight/formula]]
+* [[Index:BM|{{bilingual|索引|Index by weight/formula}}]]
 --->
 </p>
 | style="vartical-align:top" |
-<small>more data to appear soon (planned in July 2008)</small>
+<small>(not ready. will be organized soon)</small>
 |}
-|- <!--- THIRD ROW --->
+|}
+{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
+| style="width:50%;vertical-align:top;padding-left:0.2em" |
-| style="width:50%;vertical-align:top;padding-left:0.2em" |
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[Index:PS|{{Large|P}}<big>lants</big>]] {{bilingual|植物 データベース|}}</h2>
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">{{Large|F}}{{Big|atty}} {{Large|A}}{{Big|cyl}}</h2>
+{| style="background-color:transparent;border-style:none;border-collapse:collapse"
-{| style="background-color:transparent;border-style:none;border-collapse:collapase"
 |-
 | style="vartical-align:top" |
-| [[Image:Oil.jpg]]
+| [[Image:Flower.jpg]]
 | style="vartical-align:top" |
 <p>
-This is a test category.
+* [[Index:PS|{{bilingual|トップ|Plants top}}]]
+* [[Index:PlantSpecies/Order|{{bilingual|目名一覧|Plant orders}}]]
+* [[Persist:PlantFamilyList|{{bilingual|科名一覧|Plant families}}]]
+* {{bilingual|植物の情報（現在{{#countTitle:.*|Species}}属）はアドレスに[[Species:Arabidopsis]] のように属名を入れてください。|For each genus ({{#countTitle:.*|Species}} genera now), input a genus name as in [[Species:Arabidopsis]].}}
 </p>
 |}
 | style="width:50%;vertical-align:top;padding-left:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em"><span style="font-size:150%">L</span><span style="font-size:130%">ipid Information</span></h2>
-{| style="background-color:transparent;border-style:none;border-collapse:collapase"
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[:Category:CD|{{Large|C}}<big>rude</big> {{Large|D}}<big>rug/Kampo</big>]] {{bilingual|漢方・生薬 データベース|}}</h2>
+{| style="background-color:transparent;border-style:none;border-collapse:collapse"
 |-
-| style="vartical-align:top" |
+| style="vartical-align:middle" |
-| [[Image:Oil.jpg]]
+| [[Image:Crudedrug.jpg|50px]]
 | style="vartical-align:top" |
 <p>
-Currently, 1031 test data from [http://lipidbank.jp LipidBank] are available.
+* [[:Category:CD|{{bilingual|トップ|Crude Drug top}}]]
-* [http://157.82.238.146/wiki/Special:Search?ns0=1&search=LBFA&searchx=Search Molecule List]
+* [[Index:CD|{{bilingual|総索引|General index}}]]
+* [[Persist:CrudeDrugList|{{bilingual|生薬一覧|Crude Drug index}}]]
+* [[Persist:KampoList|{{bilingual|処方一覧|Prescription index}}]]
+* [[Persist:KampoReference|{{bilingual|文献一覧|Kampo books}}]]
+(with [http://kanaya.naist.jp/KNApSAcK/ NAIST] & [http://www.inm.u-toyama.ac.jp/index-j.html Toyama Univ.])
 </p>
 |}
 |}
 <br style="clear:both" />
-{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapase"
+{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
-|-
+|
-| style="width:100%;vertical-align:top;padding-right:0.2em" |
-{{Doc:Links}}
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #CC6600;margin:0.2em;padding:0.2em">{{Large|L}}<big>inks</big></h2>
+<div style="padding:0.1em 0em;margin:0.1em 0em">
+'''Allied DB''' : [http://kanaya.naist.jp/KNApSAcK/KNApSAcK.php KNApSAcK] : [http://massbank.jp/ MassBank] : [http://lipidbank.jp/ LipidBank]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Spectral DB''' : [http://www.hmdb.ca/ HMDB] : [http://webbook.nist.gov/ NIST Chemistry WebBook] : [http://www.nist.gov/srd/nist1a.htm NIST Library search program] : [http://www.aist.go.jp/RIODB/SDBS/cgi-bin/cre_index.cgi SDBS] : [http://www.spectroscopynow.com/ SpectroscopyNow] : [http://cds.dl.ac.uk/cds/cds.shtml UK Chemical DB Service] : [http://www.bmrb.wisc.edu/metabolomics/ Univ Wisconsin BioMagResBank] : [http://www.ualberta.ca/~gjones/mslib.htm Univ. Alberta MS library] : [http://www.ccrc.uga.edu/specdb/specdbframe.html Univ. Georgia Complex Carbohydrate DB] : [http://www.chempensoftware.com/organicreactions.htm Univ. Pennsylvania ChemPen Project]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Chemical DB''' : [http://chemfinder.cambridgesoft.com/ ChemFinder] : [http://www.mdli.com/downloads/public/ctfile/ctfile.jsp CTFile format] : [http://www.daylight.com/release/f_manuals.html Daylight Documentation] : [http://chemdat.merck.de/mda/int_en/catalog/ Merck online catalog] : [http://cactus.nci.nih.gov/services/ NCI database] : [http://pubchem.ncbi.nlm.nih.gov/ PubChem] : [http://blaster.docking.org/zinc/ ZINC]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em"> '''Pathway DB''' : [http://www.biocarta.com/genes/index.asp BioCarta] : [http://www.expasy.org/tools/pathways/ Biochemical Pathways] : [http://biocyc.org/ BioCyc] : [http://www.genome.ad.jp/kegg/ KEGG] : [http://umbbd.ahc.umn.edu/ Univ. Minnesota BBD] : [http://kpv.kazusa.or.jp/kappa-view/ KaPPA-View] : [http://gabi.rzpd.de/projects/MapMan/ MapMan] : [http://www.arabidopsis.org/ TAIR]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Natural Compound DB''' : [http://www.au-techno.com/tennen/ AU techno-service Co.] : [http://www2.odn.ne.jp/~had26900/constituents/chemcon_dict.htm Encyclopaedia of Plant Metabolites] : [http://pherobase.com/ Pherobase]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Genome DB''' : [http://mbgd.genome.ad.jp/ MBGD: Microbial Genome Database] : [http://ecoli.naist.jp/GB6/search.jsp Genobase] : [http://www.sgn.cornell.edu/solanaceae-project/ Sol genomics network]
+</div>
 |}

Main Page

Latest revision as of 17:09, 13 March 2014

[edit] Contents

[edit] Flavonoid Database

[edit] Basic Metabolites

Plants

Crude Drug/Kampo

Links

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