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Latest revision as of 17:09, 13 March 2014

Arita Laboratory has moved to National Institute of Genetics.　More...

[edit] Contents

[edit] Flavonoid Database

Flavonoids such as catechin, anthocyanin, flavan are important for our health (6961 data now).

(compilation with NAIST)

[edit] Basic Metabolites

Basic metabolites include organic and amino acids, DNAs, and other essential metabolites (1948 data now).

BM top

(not ready. will be organized soon)

Plants

Plants top
Plant orders
Plant families
For each genus (3961 genera now), input a genus name as in Species:Arabidopsis.

Crude Drug/Kampo

(with NAIST & Toyama Univ.)

Links

Allied DB : KNApSAcK : MassBank : LipidBank

Spectral DB : HMDB : NIST Chemistry WebBook : NIST Library search program : SDBS : SpectroscopyNow : UK Chemical DB Service : Univ Wisconsin BioMagResBank : Univ. Alberta MS library : Univ. Georgia Complex Carbohydrate DB : Univ. Pennsylvania ChemPen Project

Chemical DB : ChemFinder : CTFile format : Daylight Documentation : Merck online catalog : NCI database : PubChem : ZINC

Pathway DB : BioCarta : Biochemical Pathways : BioCyc : KEGG : Univ. Minnesota BBD : KaPPA-View : MapMan : TAIR

Natural Compound DB : AU techno-service Co. : Encyclopaedia of Plant Metabolites : Pherobase

Genome DB : MBGD: Microbial Genome Database : Genobase : Sol genomics network

@@ Line 1: / Line 1: @@
-{| style="float:right;background-color:transparent;border-style:none;border-collapse:collapase"
-|-
-|HEADER
-|-
-| SUBHEADER
-|}
 __NOTOC__
-<br style="clear:both" />
+{{#def:LANG|{{#getenv:LANG}}}}
-{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapase"
+[[User:Aritalab|{{Bilingual|東京大学・有田研究室は、国立遺伝学研究所に異動しました。|Arita Laboratory has moved to National Institute of Genetics.}}]]　[[Help:Contents|More...]]
+==Contents==
+{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
 |-
-| style="width:50%;vertical-align:top;padding-right:0.2em" |
+|style="width:45%;vertical-align:top;padding-left:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #060;margin:0.2em;padding:0.2em"><span style="font-size:150%">W</span><span style="font-size:130%">hat is Metabolome.JP?</span></h2>
+===<span style="border-bottom:3px solid #060">{{Bilingual|フラボノイド データベース|Flavonoid Database}}</span>===
-{| style="background-color:transparent;border-style:none;border-collapse:collapase"
+{| style="border-style:none;border-collapse:collapse"
 |-
 | style="vartical-align:top" |
-|
+| [[Image:Leaf.jpg]]
 | style="vartical-align:top" |
-<p>Metabolome.JP introduces metabolic research (metabolomics) from Arita Group (Univ of Tokyo) in collaboration with Nishioka Group (Keio Univ) and Kanaya Group (NAIST). The site is the official page of, and is maintained by Arita Laboratory.<BR>
+Flavonoids such as catechin, anthocyanin, flavan are important for our health ({{#countTitle:FL|}} data now).
-The site is built on [http://en.wikipedia.org/wiki/MediaWiki MediaWiki].  For our site-specific modifications, please see [[Doc:Extensions|Extensions]].</p>
-|}
+* [[:Category:FL|{{bilingual|トップ|Flavonoid top}}]]
-| style="width:50%;vertical-align:top;padding-left:0.2em" |
+* [[Index:FL    |{{bilingual|索引|Index by name/weight/formula}}]]
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #060;margin:0.2em;padding:0.2em"><span style="font-size:150%">N</span><span style="font-size:130%">ews Topics</span></h2>
+* [[Index:Journal_Titles|{{bilingual|ジャーナル|Journals reporting flavonoid}}]]
-<div style="margin:0.1em;padding:0.1em 0.5em">
+(compilation with [http://kanaya.naist.jp/KNApSAcK/ NAIST])
-* Workshop/Meeting Information
-** [http://www.jspp.org/11lecture/index.html 49th JSPP植物生理学会]
-** [http://prime.psc.riken.jp/icpm2008/ 5th International Conference on Plant Metabolomics (ICPM)] Jul 15-18, 2008
-*Job Opportunities
-** Arita Laboratory looks for a post-doc.
-</div>
 |}
-<br style="clear:both" />
+|style="width:45%;vertical-align:top;padding-left:0.2em" |
-{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapase"
+===<span style="border-bottom:3px solid #a00">{{Bilingual|基礎代謝物|Basic Metabolites}}</span>===
+{| style="border-style:none;border-collapse:collapse"
 |-
-| style="width:33%;vertical-align:top;padding-right:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em"><span style="font-size:150%">FL</span><span style="font-size:130%">avonoid Information</span></h2>
-{| style="background-color:transparent;border-style:none;border-collapse:collapase"
-|-
-| style="vartical-align:top" |
-| [[Image:Leaf.jpg]]
 | style="vartical-align:top" |
 <p>
-Currently, 6850 structures are classified under FL category.
+{{Bilingual
+|基礎代謝物とは、有機酸、アミノ酸、核酸、その他生命に必要な代謝物を意味します。 ({{#countTitle:BM|}} 物質)
+|Basic metabolites include organic and amino acids, DNAs, and other essential metabolites ({{#countTitle:BM|}} data now).}}
-* [[:Category:FL|Structural class]] of FL
+* [[:Category:BM|{{bilingual|トップ|BM top}}]]
-* [[:Category:FL_All|All classnames]] in FL
+<!---
-* [[Reference:Journal_Titles|Journals reporting flavonoids]]
+* [[Index:BM|{{bilingual|索引|Index by weight/formula}}]]
+--->
 </p>
+| style="vartical-align:top" |
+<small>(not ready. will be organized soon)</small>
 |}
-| style="width:33%;vertical-align:top;padding-left:0.2em" |
+|}
+{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
+| style="width:50%;vertical-align:top;padding-left:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #a00;margin:0.2em;padding:0.2em"><span style="font-size:150%">B</span><span style="font-size:130%">asic Metabolism</span></h2>
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[Index:PS|{{Large|P}}<big>lants</big>]] {{bilingual|植物 データベース|}}</h2>
-{| style="background-color:transparent;border-style:none;border-collapse:collapase"
+{| style="background-color:transparent;border-style:none;border-collapse:collapse"
 |-
 | style="vartical-align:top" |
-| pic
+| [[Image:Flower.jpg]]
 | style="vartical-align:top" |
 <p>
+* [[Index:PS|{{bilingual|トップ|Plants top}}]]
+* [[Index:PlantSpecies/Order|{{bilingual|目名一覧|Plant orders}}]]
+* [[Persist:PlantFamilyList|{{bilingual|科名一覧|Plant families}}]]
+* {{bilingual|植物の情報（現在{{#countTitle:.*|Species}}属）はアドレスに[[Species:Arabidopsis]] のように属名を入れてください。|For each genus ({{#countTitle:.*|Species}} genera now), input a genus name as in [[Species:Arabidopsis]].}}
 </p>
 |}
-| style="width:33%;vertical-align:top;padding-left:0.2em" |
+| style="width:50%;vertical-align:top;padding-left:0.2em" |
-<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em"><span style="font-size:150%">L</span><span style="font-size:130%">ipid Information</span></h2>
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[:Category:CD|{{Large|C}}<big>rude</big> {{Large|D}}<big>rug/Kampo</big>]] {{bilingual|漢方・生薬 データベース|}}</h2>
-{| style="background-color:transparent;border-style:none;border-collapse:collapase"
+{| style="background-color:transparent;border-style:none;border-collapse:collapse"
 |-
-| style="vartical-align:top" |
+| style="vartical-align:middle" |
-| [[Image:Oil.jpg]]
+| [[Image:Crudedrug.jpg|50px]]
 | style="vartical-align:top" |
 <p>
-Currently, 1031 test data from [http://lipidbank.jp LipidBank] are available.
+* [[:Category:CD|{{bilingual|トップ|Crude Drug top}}]]
-* [http://157.82.238.146/mediawiki/index.php?title=Special%3AAllpages&from=&namespace=106 molecule list]
+* [[Index:CD|{{bilingual|総索引|General index}}]]
+* [[Persist:CrudeDrugList|{{bilingual|生薬一覧|Crude Drug index}}]]
+* [[Persist:KampoList|{{bilingual|処方一覧|Prescription index}}]]
+* [[Persist:KampoReference|{{bilingual|文献一覧|Kampo books}}]]
+(with [http://kanaya.naist.jp/KNApSAcK/ NAIST] & [http://www.inm.u-toyama.ac.jp/index-j.html Toyama Univ.])
 </p>
 |}
 |}
 <br style="clear:both" />
-{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapase"
+{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
-|-
+|
-| style="width:100%;vertical-align:top;padding-right:0.2em" |
-{{Doc:Links}}
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #CC6600;margin:0.2em;padding:0.2em">{{Large|L}}<big>inks</big></h2>
+<div style="padding:0.1em 0em;margin:0.1em 0em">
+'''Allied DB''' : [http://kanaya.naist.jp/KNApSAcK/KNApSAcK.php KNApSAcK] : [http://massbank.jp/ MassBank] : [http://lipidbank.jp/ LipidBank]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Spectral DB''' : [http://www.hmdb.ca/ HMDB] : [http://webbook.nist.gov/ NIST Chemistry WebBook] : [http://www.nist.gov/srd/nist1a.htm NIST Library search program] : [http://www.aist.go.jp/RIODB/SDBS/cgi-bin/cre_index.cgi SDBS] : [http://www.spectroscopynow.com/ SpectroscopyNow] : [http://cds.dl.ac.uk/cds/cds.shtml UK Chemical DB Service] : [http://www.bmrb.wisc.edu/metabolomics/ Univ Wisconsin BioMagResBank] : [http://www.ualberta.ca/~gjones/mslib.htm Univ. Alberta MS library] : [http://www.ccrc.uga.edu/specdb/specdbframe.html Univ. Georgia Complex Carbohydrate DB] : [http://www.chempensoftware.com/organicreactions.htm Univ. Pennsylvania ChemPen Project]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Chemical DB''' : [http://chemfinder.cambridgesoft.com/ ChemFinder] : [http://www.mdli.com/downloads/public/ctfile/ctfile.jsp CTFile format] : [http://www.daylight.com/release/f_manuals.html Daylight Documentation] : [http://chemdat.merck.de/mda/int_en/catalog/ Merck online catalog] : [http://cactus.nci.nih.gov/services/ NCI database] : [http://pubchem.ncbi.nlm.nih.gov/ PubChem] : [http://blaster.docking.org/zinc/ ZINC]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em"> '''Pathway DB''' : [http://www.biocarta.com/genes/index.asp BioCarta] : [http://www.expasy.org/tools/pathways/ Biochemical Pathways] : [http://biocyc.org/ BioCyc] : [http://www.genome.ad.jp/kegg/ KEGG] : [http://umbbd.ahc.umn.edu/ Univ. Minnesota BBD] : [http://kpv.kazusa.or.jp/kappa-view/ KaPPA-View] : [http://gabi.rzpd.de/projects/MapMan/ MapMan] : [http://www.arabidopsis.org/ TAIR]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Natural Compound DB''' : [http://www.au-techno.com/tennen/ AU techno-service Co.] : [http://www2.odn.ne.jp/~had26900/constituents/chemcon_dict.htm Encyclopaedia of Plant Metabolites] : [http://pherobase.com/ Pherobase]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Genome DB''' : [http://mbgd.genome.ad.jp/ MBGD: Microbial Genome Database] : [http://ecoli.naist.jp/GB6/search.jsp Genobase] : [http://www.sgn.cornell.edu/solanaceae-project/ Sol genomics network]
+</div>
 |}

Main Page

Latest revision as of 17:09, 13 March 2014

[edit] Contents

[edit] Flavonoid Database

[edit] Basic Metabolites

Plants

Crude Drug/Kampo

Links

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