Metabolic Pathways (代謝経路)

Pathway name (* not created, ! incomplete)
	Num. of Reactions	Linked Pathways
	comments

2-ketoglutarate dehydrogenase complex
	3
4-aminobutyrate degradation
	2
! myo-inositol biosynthesis
	2
	mapping
acetate utilization
	1
acetoin biosynthesis
	3	glycolysis	acetoin biosynthesis II	butanediol biosynthesis	valine biosynthesis
! acetoin biosynthesis II
	2*	glycolysis	acetoin biosynthesis	butanediol biosynthesis
	mapping
alanine degradation
	1
allantoin degradation
	5
arginine biosynthesis
	8
arginine degradation (aerobic)
	6
arginine degradation (anaerobic)
	4
asparagine biosynthesis
	2
asparagine degradation
	2
aspartate biosynthesis	2
	2	glycolysis	homoserine biosynthesis
! beta-alanine biosynthesis
	2	spermidine and methylthioadenosine biosynthesispantothenate and coenzyme A biosynthesis
	? Spermine -> Amino-propion aldehyde
	mapping
biotin biosynthesis
	4
butanediol biosynthesis
	1	acetoin biosynthesis	acetoin biosynthesis II
butanediol degradation
	1	butanediol biosynthesis
* CDP-diacylglycerol biosynthesis
* chitin biosynthesis
chitosan biosynthesis
	1
chorismate biosynthesis
	7	folate biosynthesis	tyrosine biosynthesis	tryptophan biosynthesis	phenylalanine biosynthesis
citrulline biosynthesis
	2	arginine biosynthesis
cysteine biosynthesis from homocysteine
	2	homocysteine biosynthesis	glutathione biosynthesis
* cysteine biosynthesis/homocysteine degradation
	cysteine biosynthesis from homocysteine と同じ
de novo biosynthesis of purine nucleotides
	10	De novo biosynthesis of purine nucleotides(deoxy-ATP)	de novo biosynthesis of purine nucleotides(deoxy-GTP)
	IMP --> deoxy-ATP, IMP --> deoxy-GTP は別ページ
! Pathway:De novo biosynthesis of purine nucleotides(deoxy-ATP)
	5	de novo biosynthesis of purine nucleotides
	ATP -> dATP なし
! Pathway:De novo biosynthesis of purine nucleotides(deoxy-GTP)
	5	de novo biosynthesis of purine nucleotides
	GTP -> dGTP なし
! de novo biosynthesis of pyrimidine deoxyribonucleotides
	4	UDPからdUTPを追加
	CDP or dCMP --> dUTP は描いていない
de novo biosynthesis of pyrimidine ribonucleotides
	9	
de novo NAD biosynthesis
	9	NAD salvage pathway	Nicotinamide riboside salvage pathway I
dehydro-D-arabinono-1,4-lactone biosynthesis
	2
* dolichyl glucosyl phosphate biosynthesis
* dolichyl phosphate D-mannose biosynthesis
! ergosterol biosynthesis
	12	lanosterol まで
* fatty acid biosynthesis, initial steps
* fatty acid elongation, saturated
* fatty acid elongation, unsaturated
* fatty acid oxidation pathway
* folate biosynthesis
	folate biosynthesis II と folate interconversions をあわせたもの
! folate biosynthesis II
	8	folate interconversions	folate polyglutamylation
	chorismate からの経路なし	
! folate interconversions
	5	folate polyglutamylation	de novo biosynthesis of pyrimidine deoxyribonucleotides	folate biosynthesis	de novo biosynthesis of purine nucleotides
	5-methyl-THF への経路なし
* folate polyglutamylation
* folate transformations
! formaldehyde oxidation II (glutathione-dependent)
	4
	mapping
fructose degradation
	1	glycolysis
! galactose degradation
	3	UDP-D-galactose まで
! gluconeogenesis
	9	malate -> pyruvate -> oxaloacetic acid の経路なし
glutamate biosynthesis from ammonia
	1	amino acids biosynthesis	folate bio synthesis	glutamine biosynthesis
glutamate biosynthesis from glutamine
	1	glutamine biosynthesis
glutamate degradation I
	3
glutamate degradation IX
	1
glutamine biosynthesis
	1	glutamate biosynthesis from glutamine
glutathione biosynthesis
	2	cysteine biosynthesis from homocysteine	glutathione degradation	glycine biosynthesis from serine	glutamatesynthesis
glutathione degradation
	2	glutathione biosynthesis
* glutathione-glutaredoxin redox reactions
* glutathione-glutaredoxin system
glycerol biosynthesis
	2	glycolysis
glycerol degradation
	2	glycolysis	gluconeogenesis
glycine biosynthesis from glyoxylate
	1	glyoxylate cycle	serine biosynthesis from glyoxylate
glycine biosynthesis from serine
	1	serine biosynthesis from 3-phosphoglycerate	glutathione biosynthesis
glycine biosynthesis from threonine
	1	threonine biosynthesis
* glycine cleavage complex
* glycogen biosynthesis
* glycogen catabolism
glycolysis
	8	pentose phosphate pathway	superpathway of acetoin and butanediol biosynthesis	fructose degradation	 glycerol biosynthesis	
glyoxylate cycle
	6	TCA cycle	gluconeogenesis	glycine biosynthesis from glyoxylate
heme biosynthesis
	4	tetrapyrrole biosynthesis
! hexaprenyl diphosphate biosynthesis
	3	Geranylgeranyl diphosphate まで
histidine biosynthesis
	10
homocysteine and cysteine interconversion
	2	homocysteine biosynthesis
homocysteine biosynthesis
	2	homoserine biosynthesis	methionine biosynthesis	homocysteine and cysteine interconversion	cysteine biosynthesis from homocysteine
homoserine biosynthesis
	3	aspartate biosynthesis	threonine biosynthesis	homocysteine biosynthesis
* inositol phosphate biosynthesis
isoleucine biosynthesis
	5
isoleucine degradation
	2
L-serine degradation
	1
leucine biosynthesis
	4
	mapping
leucine degradation
	3
* lipases biosynthesis
* lipid-linked oligosaccharide biosynthesis
lysine biosynthesis
	8
lysine degradation III
	6
mannose degradation
	2	glycolysis
! methionine biosynthesis
	1	homocysteine biosynthesis	S-adenosylmethionine biosynthesis
	左側のみ
methionine salvage pathway
	6	spermine and methylthioadenosine biosynthesis	spermidine and methylthioadenosine biosynthesis	S-adenosylmethionine biosynthesis
	mapping
methylglyoxal catabolism
	2
! mevalonate pathway
	7
	mapping
NAD salvage pathway
	5	nicotinamide riboside salvage pathway I	nicotinamide riboside salvage pathway II	nicotinate riboside salvage pathway II	nicotinate riboside salvage pathway I	de novo NAD biosynthesis
nicotinamide riboside salvage pathway I
	2	nicotinamide riboside salvage pathway II	de novo NAD biosynthesis	NAD salvage pathway
nicotinamide riboside salvage pathway II
	1	nicotinamide riboside salvage pathway I	NAD salvage pathway
********** nicotinate riboside salvage pathway I
	1	nicotinate riboside salvage pathway II	NAD salvage pathway
nicotinate riboside salvage pathway II
	1	nicotinate riboside salvage pathway I	NAD salvage pathway
! non-oxidative branch of the pentose phosphate pathway
	4
	D-Ribulose 5-phosphate -> D-Xylulose 5-phosphate -> D-Sedoheptulose 7-phosphate -> D-Erythrose 4-phosphate
oxidative branch of the pentose phosphate pathway
	3
! p-hydroxybenzoate biosynthesis
	6
	chorismate -> p-hydroxybenzoate なし
! pantothenate and coenzyme A biosynthesis
	8
	spermine からの経路なし
* pentose phosphate pathway
	Oxidative branch of the pentose phosphate pathway と non-oxidative branch of the pentose phosphate pathway
periplasmic NAD degradation
	2
phenylalanine biosynthesis
	3	chorismate biosynthesis
phenylalanine degradation
	3
* phosphatidic acid and phospholipid biosynthesis
* phosphatidic acid biosynthesis
* phosphatidylinositol biosynthesis
* phosphatidylinositol phosphate biosynthesis
* phospholipid biosynthesis
* phospholipid biosynthesis (Kennedy pathway)
* phospholipid biosynthesis II (Kennedy pathway)
proline biosynthesis
	4
proline utilization
	2
* protein modifications
putrescine biosynthesis
	1	spermidine and methylthioadenosine biosynthesis
! pyridoxal 5'-phosphate salvage pathway
	2
	左側のみ
* pyruvate dehydrogenase complex
* removal of superoxide radicals
riboflavin, FMN and FAD biosynthesis
	8
	Biochemical Pathways に従った
S-adenosylmethionine biosynthesis
	1	methionine biosynthesis	spermine and methylthioadenosine biosynthesis	spermidine and methylthioadenosine biosynthesis	S-adenosylmethionine cycle
	S-adenosylmethionine cycle に含まれる。
S-adenosylmethionine cycle
	4
* salvage pathways of adenine, hypoxanthine and their nucleosides
* salvage pathways of guanine, xanthine and their nucleosides
* salvage pathways of purines and their nucleosides
* salvage pathways of pyrimidine deoxyribonucleotides
* salvage pathways of pyrimidine ribonucleotides
serine biosynthesis from 3-phosphoglycerate
	3	glycolysis	cysteine biosynthesis from homocysteine	glycine biosynthesis from serine
serine biosynthesis from glyoxylate
	1	glycine biosynthesis from glyoxylate
! siroheme biosynthesis
	3	tetrapyrrole biosynthesis
	mapping
! spermidine and methylthioadenosine biosynthesis
	1
	SAM 側は描いてない
! spermine and methylthioadenosine biosynthesis
	1
	SAM 側は描いてない
* sphingolipid metabolism
! sucrose degradation
	1	fructose degradation	superpathway of glucose fermentation
	Sucrose -> D-Glucose を描いた
sulfate assimilation pathway
	4	homocysteine biosynthesis
* superpathway of acetoin and butanediol biosynthesis
* superpathway of chorismate
* superpathway of glucose fermentation
* superpathway of glutamate biosynthesis
* superpathway of glutathione metabolism (truncated γ-glutamyl cycle)
* superpathway of heme and siroheme biosynthesis
* superpathway of histidine, purine, and pyrimidine biosynthesis
* superpathway of leucine, isoleucine, and valine biosynthesis
* superpathway of methionine biosynthesis
* superpathway of methionine salvage pathway
* superpathway of NAD biosynthesis
* superpathway of phenylalanine, tyrosine and tryptophan biosynthesis
* superpathway of phospholipid biosynthesis
* superpathway of polyamine biosynthesis
* superpathway of purine biosynthesis and salvage pathways
* superpathway of serine and glycine biosynthesis
* superpathway of sulfur amino acid biosynthesis
* superpathway of TCA cycle and glyoxylate cycle
* superpathway of threonine and methionine biosynthesis
* superpathway of threonine biosynthesis
* superpathway of ubiquinone biosynthesis
TCA cycle, aerobic respiration
	10
tetrapyrrole biosynthesis
	3	heme biosynthesis
* thioredoxin system
threonine biosynthesis
	2	homoserine biosynthesis
* threonine degradation
trehalose biosynthesis
	2
trehalose degradation
	1
* triglyceride biosynthesis
tryptophan biosynthesis
	5	chorismate biosynthesis
tryptophan degradation
	3
tryptophan degradation via kynurenine
	7
tyrosine biosynthesis
	3	chorismate biosynthesis
tyrosine degradation
	3
! ubiquinone biosynthesis
	7
UDP-N-acetylglucosamine biosynthesis
	4	chitin biosynthesis
valine biosynthesis
	4	glycolysis	pantothenate and coenzyme A biosynthesis	leucine biosynthesis
valine degradation
	3
* very long chain fatty acid biosynthesis
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Category:MP

Metabolic Pathways (代謝経路)

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