MediaWiki:Lipoquality.js
From Metabolomics.JP
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// html /////////////////////////////////////////////////////////////////////////////////////////////////////////
// <span id="search"></span><span id="show"></span>
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// 2017/01/06 ・新フォーマットに対応
// ・barchartにおいて、ratioと絶対量で切り替え可能とした
// ※ cutoffをどうするか検討中
// 2016/10/26 ・ヒートマップを拡大した状態でsetDataするとおかしな挙動になるため
// 必ずzoomOutするよう修正
// ・画像出力できるよう修正
// ・画像出力時、X軸がおかしくなるバグを修正
// 2016/10/18 ・highchartsの仕様が変わったようで、setDataやズームをするとX軸がおかしくなるので、
// setCategoriesを使用して対処
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// external script //////////////////////////////////////////////////////////////////////////////////////////////
mw.loader.load( ['jquery.ui.sortable'] );
mw.loader.load('https://code.highcharts.com/stock/highstock.js', "text/javascript");
// initialize //////////////////////////////////////////////////////////////////////////////////////////////////
addOnloadHook(init);
// 初期化 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
const DEFAULT_BAR_COLOR = "#7cb5ec";
var barColor = DEFAULT_BAR_COLOR;
function init()
{
// highstock.jsに依存するため、別で読み込む
var heatmapJS = document.createElement("script");
heatmapJS.src = "https://code.highcharts.com/modules/heatmap.js";
document.getElementsByTagName("head")[0].appendChild(heatmapJS);
var exportingJS = document.createElement("script");
exportingJS.src = "https://code.highcharts.com/modules/exporting.js";
document.getElementsByTagName("head")[0].appendChild(exportingJS);
var searchButton = document.createElement("input");
searchButton.value = "search";
searchButton.id = "searchButton";
searchButton.type = "button";
searchButton.style.width = "100%";
searchButton.onclick = function(){search()};
document.getElementById("search").appendChild(searchButton);
var showButton = document.createElement("input");
showButton.value = "show graph";
showButton.id = "showButton";
showButton.type = "button";
showButton.disabled = "yes";
showButton.onclick = function(){barColor = DEFAULT_BAR_COLOR; showChart()};
document.getElementById("show").appendChild(showButton);
var checkButton = document.createElement("input");
checkButton.value = "all check/uncheck";
checkButton.type = "button";
checkButton.onclick = function(){checkAllResult()};
document.getElementById("check").appendChild(checkButton);
document.getElementById("graphform").style.display = "none";
// insert "Reset zoom" button
var resetZoomButton = document.createElement("input");
resetZoomButton.setAttribute("type", "button");
resetZoomButton.value = "Reset zoom";
resetZoomButton.id = "resetZoomButton";
resetZoomButton.style.visibility = "hidden";
resetZoomButton.onclick = unzoomBarCharts;
document.getElementById("resetZoom").appendChild(resetZoomButton);
setCombobox('SampleSource');
setCombobox('SampleType');
setCombobox('LipidClass');
$(window).resize(function() {
resizeChart();
});
}
// ウィンドウサイズが変更されたとき、チャートの幅も修正する ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function resizeChart()
{
if(chart == undefined || chart.length == 0)
return;
if(chart[0].options.chart.type != "heatmap"){
// barchart & piechart
var height = 300;
var pieWidth = 400;
var width = $(window).width() - $("#sortableList").width() - $("#mw-panel").width() - pieWidth;
if(width < 300)
width = 300;
for(var i = 0; i < chart.length; i ++)
$("#container" + i).highcharts().setSize(width, height);
for(var i = 0; i < piechart.length; i ++)
$("#pieContainer" + i).highcharts().setSize(pieWidth, height);
} else {
var height = 400;
var width = $(window).width() - $("#sortableList").width() - $("#mw-panel").width();
// heatmap
for(var i = 0; i < chart.length; i ++)
$("#container" + i).highcharts().setSize(width, height);
}
}
// 検索ボックスの初期化 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function setCombobox(name)
{
var url = '/mediawiki/api.php?action=query&prop=revisions&redirects=1&titles=Lipoquality:' + name + '&rvprop=content&format=xml'
var xmlHttpRequest = new XMLHttpRequest();
xmlHttpRequest.onreadystatechange = function()
{
var READYSTATE_COMPLETED = 4;
if(this.readyState == READYSTATE_COMPLETED){
var HTTP_STATUS_OK = 200;
if(this.status == HTTP_STATUS_OK) {
// success
var parser = new DOMParser();
var dom = parser.parseFromString(this.response.trim(), "text/xml");
var text = dom.getElementsByTagName("rev");
var lines = text[0].textContent.split("\n");
var select = document.getElementById(name.toLowerCase());
if(name != 'LipidClass')
lines.unshift('All');
for(var i = 0; i < lines.length; i ++){
var opt = document.createElement('option');
opt.value = opt.textContent = lines[i].replace(/^\*/, '').replace(/^ */, '').replace(/ *$/, '').replace(/"/g, """).replace(/'/g, "&rsquo");;
select.appendChild(opt);
}
} else {
// error
console.log('search failed. ' + this.status + ':' + this.statusText + "/" + this.readyState);
}
}
}
// search
xmlHttpRequest.open('GET', url, true);
xmlHttpRequest.responseType = 'text';
xmlHttpRequest.send(null);
}
// XSS対策用 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function escape(text)
{
if(isFinite(text))
return text;
return text.replace(/&/g, "&").replace(/</g, "<").replace(/>/g, ">");
}
function attrEscape(text)
{
if(isFinite(text))
return text;
return text.replace(/&/g, "&").replace(/</g, "<").replace(/>/g, ">").replace(/"/g, """).replace(/'/g, "’");
}
function inchiEscape(text)
{
if(isFinite(text))
return text;
return text.replace(/^InChIKey=/, "").replace(/[^A-Z0-9-]/g, "");
}
// 検索 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function search()
{
document.getElementById("searchButton").disabled = true;
document.getElementById('hit').innerHTML = '';
document.getElementById("showButton").disabled = "yes";
document.getElementById("graphform").style.display = "none";
var classification = document.getElementById("samplesource").value;
var sample = document.getElementById("sampletype").value;
var type = document.getElementById("lipidclass").value;
var url = 'https://script.google.com/macros/s/AKfycbxW5WpkJH0PUmmLrMtrluvkaKmz0OTTfeBucudy5-LxalQ7vus/exec?classification=' + classification + '&sample=' + sample + '&type=' + type + '&q=search&callback=hasSearched';
// var url = '/lipo/json.txt'
document.getElementById('searching').style.display = "block";
// remove old elements
var root = document.getElementById('result');
root.textContent = '';
for(var i = root.childNodes.length-1; i >= 0; i --)
root.removeChild(root.childNodes[i]);
// jsonpを使って検索
var jsonp = document.createElement('script');
jsonp.src = url;
document.head.appendChild(jsonp);
}
function hasSearched(jsonp)
{
document.getElementById('searching').style.display = "none";
var root = document.getElementById('result');
var result = jsonp;
//var result = JSON.parse(escape(jsonp));
document.getElementById('hit').innerHTML = 'result. ' + escape(result.length) + ' hit(s).';
// 最長文字数を調べる
var lenmax = 0;
for(var i = 0; i < result.length; i ++){
if(result[i].title.length > lenmax)
lenmax = result[i].title.length;
}
lenmax += 6; // "(meta)"分
lenmax /= 1.5;
for(var i = 0; i < result.length; i ++){
var span = document.createElement('span');
span.style.display = "inline-block";
span.style.width = lenmax + "em";
var check = document.createElement('input');
check.type = 'checkbox';
check.id = attrEscape(result[i].title);
check.value = attrEscape(result[i].title);
check.name = 'target';
check.className = "results";
check.onchange = function(e){
checkSelection();
};
span.appendChild(check);
var title = document.createElement('label');
title.setAttribute('for', attrEscape(result[i].title));
title.innerHTML = escape(result[i].title) + ' <a href="' + result[i].meta["Method link"] + '" target="_blank">(meta)</a>';
span.appendChild(title);
root.appendChild(span);
}
document.getElementById("searchButton").disabled = false;
document.getElementById("graphform").style.display = "block";
}
function checkSelection()
{
var c = document.getElementsByClassName("results");
var disabled = true;
for(var i = 0; i < c.length; i ++){
if(c[i].checked){
disabled = false;
break;
}
}
document.getElementById("showButton").disabled = disabled;
}
function checkAllResult()
{
var c = document.getElementsByClassName("results");
var checked = 0;
for(var i = 0; i < c.length; i ++){
if(c[i].checked)
checked ++;
}
var state = true;
if(checked == c.length)
state = false;
for(var i = 0; i < c.length; i ++)
c[i].checked = state;
checkSelection();
}
// チャート表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function showChart()
{
var targets = '';
var boxes = document.getElementsByName('target');
for(var i = 0; i < boxes.length; i ++){
if(boxes[i].checked)
targets += ',' + boxes[i].value;
}
if(targets.length == 0){
alert("選択してください");
return;
}
targets = targets.substring(1);
document.getElementById("resetZoomButton").style.visibility = "hidden";
document.getElementById("showButton").disabled = true;
document.getElementById("bar") .disabled = true;
document.getElementById("heatmap") .disabled = true;
document.getElementById("sortableList").style.display = "none";
var sortableList = document.getElementById("sortableList");
for(var i = sortableList.childNodes.length-1; i >= 0; i --)
sortableList.removeChild(sortableList.childNodes[i]);
var rateDiv = document.getElementById("rate");
for(var i = rateDiv.childNodes.length-1; i >= 0; i --)
rateDiv.removeChild(rateDiv.childNodes[i]);
var chartType;
if(document.getElementById('bar').checked)
chartType = 'bar';
else
chartType = 'heatmap';
retrieveChartData(targets, chartType);
}
// データ取得 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function retrieveChartData(targets, chartType)
{
var url = 'https://script.google.com/macros/s/AKfycbxW5WpkJH0PUmmLrMtrluvkaKmz0OTTfeBucudy5-LxalQ7vus/exec?id=' + targets + '&type=' + chartType + '&q=data&callback=hasRetrieved';
//var url = '/lipo/data.php?id=' + targets + '&type=' + chartType + '&q=data';
// jsonpを使った取得
var cutoff = document.getElementById("cutoff");
for(var i = cutoff.childNodes.length-1; i >= 0; i --)
cutoff.removeChild(cutoff.childNodes[i]);
var pieRoot = document.getElementById('pieContainer');
for(var i = pieRoot.childNodes.length-1; i >= 0; i --)
pieRoot.removeChild(pieRoot.childNodes[i]);
var root = document.getElementById('container');
for(var i = root.childNodes.length-1; i >= 0; i --)
root.removeChild(root.childNodes[i]);
document.getElementById('retrieving').style.display = "block";
var jsonp = document.createElement('script');
jsonp.src = url;
document.head.appendChild(jsonp);
}
// コールバック関数(jsonp) ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function hasRetrieved(jsonp)
{
document.getElementById('retrieving').style.display = "none";
var root = document.getElementById('container');
// remove old elements
root.textContent = '';
// for(var i = root.childNodes.length-1; i >= 0; i --)
// root.removeChild(root.childNodes[i]);
var chartType;
if(document.getElementById('bar').checked)
chartType = 'bar';
else
chartType = 'heatmap';
var cutoff = document.getElementById("cutoff");
var cutoffText = document.createElement("input");
cutoffText.id = "cutoffValue";
cutoffText.type = "number";
cutoffText.value = 0;
cutoffText.min = 0;
cutoffText.max = 80;
cutoffText.style.width = "4em";
cutoffText.style.textAlign = "right";
cutoff.appendChild(cutoffText);
var cutoffButton = document.createElement("input");
cutoffButton.value = "< cutoff";
cutoffButton.type = "button";
cutoff.appendChild(cutoffButton);
var result = jsonp;
//var result = JSON.parse(escape(jsonp));
if(chartType == 'bar')
showBarChart(result);
else
showHeatmap(result);
document.getElementById("showButton").disabled = false;
document.getElementById("bar") .disabled = false;
document.getElementById("heatmap") .disabled = false;
document.getElementById("sortableList").style.display = "block";
}
// バーチャート ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
var gBarData;
function getInchiOnBar(seq, x)
{
window.open("http://jcbl.jp/wiki/LBG" + gBarData[seq][x], "new");
console.log(seq + "/" + x + " => " + gBarData[seq][x]);
}
var chart;
var piechart;
var defaultTickInterval = currentTickInterval = 5;
// バーチャートのズーム解除 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function unzoomBarCharts() {
for(var i = 0; i < chart.length; i ++){
//chart[i].xAxis[0].options.tickInterval = defaultTickInterval;
chart[i].xAxis[0].isDirty = true;
chart[i].xAxis[0].setExtremes(null, null, animation=true);
}
document.getElementById("resetZoomButton").style.visibility = "hidden";
}
// データの切り替え（表示/非表示、0-intensity) ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function setBarchartData()
{ // inchiキー未処理 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
var target = [];
var cutoff = parseInt(document.getElementById("cutoffValue").value);
for(var j = 0; j < chart[0].data.length; j ++){
var not0 = false;
for(var i = 0; i < chart.length; i ++){
if(chart[i].data[j][1] >= cutoff){
not0 = true;
break;
}
}
target[j] = not0;
}
for(var j = 0; j < chart.length; j ++){
var i = 0;
var data = [];
var xLabels = [];
for(var k = 0,l = 0; k < chart[j].data.length; k ++){
if(target[k]){
// data[i] = [chart[j].xLabels[k], chart[j].data[k][1]];
if(document.getElementById("ratio").checked)
data[i] = [chart[j].xLabels[k], chart[j].srcdata[k] * 100 / chart[j].max];
else
data[i] = [chart[j].xLabels[k], chart[j].srcdata[k]];
xLabels[i++] = chart[j].xLabels[k];
}
}
if(document.getElementById("ratio").checked){
chart[j].yAxis[0].setExtremes(0, 100);
chart[j].yAxis[0].axisTitle.attr({text: "Relative Intensity (%)"});
chart[j].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'})
} else {
chart[j].yAxis[0].setExtremes(0, chart[j].max);
chart[j].yAxis[0].axisTitle.attr({text: "Intensity (" + chart[j].quantification + ")"});
chart[j].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '</b>'})
}
chart[j].xAxis[0].categories = xLabels;
chart[j].series[0].setData(data, true);
}
unzoomBarCharts();
}
// 表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function showBarChart(result)
{
function computeTickInterval(xMin, xMax)
{
var zoomRange = xMax - xMin;
if(zoomRange <= 2)
currentTickInterval = 0.5;
if(zoomRange < 20)
currentTickInterval = 1;
else if(zoomRange < 100)
currentTickInterval = 5;
}
// create ignore 0-intensity button
document.getElementById("cutoffValue").onchange = function(){
setBarchartData();
};
// create sortable list
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < result[0].map.length; i ++){
var line = document.createElement("div");
var cbox = document.createElement("input");
cbox.setAttribute("type", "checkbox");
cbox.setAttribute("checked", "yes");
cbox.setAttribute("seq", i);
cbox.id = "item" + i;
cbox.onchange = function(e){
// 表示/非表示の切り替え
var seq = this.getAttribute("seq");
var option;
if(this.checked){
option = "block";
} else {
option = "none";
}
document.getElementById("container" + seq).style.display = option;
document.getElementById("pieContainer" + seq).style.display = option;
};
line.appendChild(cbox);
var label = document.createElement("label");
label.setAttribute("for", "item" + i);
label.innerHTML = (i+1) + "." + escape(result[0].map[i].title);
line.appendChild(label);
sortableList.appendChild(line);
}
$('#sortableList').sortable({
cursor: 'move',
update: function(event, ui){
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < sortableList.childNodes.length; i ++){
var seq = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
document.getElementById("container" + seq).setAttribute("order", i);
document.getElementById("pieContainer" + seq).setAttribute("order", i);
}
$("#container").html(
$("#container > div").sort(function(o1,o2)
{
var n1 = parseInt($(o1).attr("order"), 10);
var n2 = parseInt($(o2).attr("order"), 10);
if(n1 < n2) return -1;
if(n1 > n2) return 1;
return 0;
})
);
$("#pieContainer").html(
$("#pieContainer > div").sort(function(o1,o2)
{
var n1 = parseInt($(o1).attr("order"), 10);
var n2 = parseInt($(o2).attr("order"), 10);
if(n1 < n2) return -1;
if(n1 > n2) return 1;
return 0;
})
);
}
});
// create barchart(s)
gBarData = [];
chart = [];
piechart = [];
var root = document.getElementById('container');
var pieRoot = document.getElementById('pieContainer');
for(var i = 0; i < result[0].map.length; i ++){
gBarData[i] = [];
// データの整理
var data = [];
var srcdata = [];
var xLabels = [];
for(var j = 0; j < result[0].map[i].data.length; j ++){
// data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)];
data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)];
srcdata[j] = attrEscape(result[0].map[i].data[j][0]);
xLabels[j] = attrEscape(result[0].x[j]);
// gBarData[i][j] = inchiEscape(result[0].map[i].data[j][2]); // InChIキー
var type = result[0].map[i].title.replace(/.*\//,"");
gBarData[i][j] = type + attrEscape(result[0].x[j]).replace("/","-"); // InChIキー
}
// barchartの追加
var parent = document.createElement('div');
parent.id = 'container' + i;
parent.setAttribute("order", i);
root.appendChild(parent);
chart[i] = new Highcharts.Chart({
chart: {
type: 'column',
zoomType: 'x',
renderTo: parent,
height: 250,
resetZoomButton: {
theme: {
display: 'none'
}
}
},
title: {
text: (i+1) + '.' + attrEscape(result[0].map[i].title)
},
xAxis: {
min: 0,
type: 'category',
labels: {
rotation: -90,
style: {
fontSize: '11px',
fontFamily: 'Verdana, sans-serif'
},
step: 1
},
events : {
afterSetExtremes: function(){
if(!this.chart.options.chart.isZoomed){
if(this.chart.options.chart.isZoomed !== undefined)
document.getElementById("resetZoomButton").style.visibility = "visible";
var xMin = this.chart.xAxis[0].min;
var xMax = this.chart.xAxis[0].max;
var zmRange = computeTickInterval(xMin, xMax);
for(var i = 0; i < chart.length; i ++){
chart[i].xAxis[0].options.tickInterval = zmRange;
chart[i].xAxis[0].isDirty = true;
if(chart[i] !== this){
chart[i].options.chart.isZoomed = true;
chart[i].xAxis[0].setExtremes(xMin, xMax, true);
chart[i].options.chart.isZoomed = false;
}
}
}
},
}
},
scrollbar: {
enabled: true
},
yAxis: {
min: 0,
max: 100,
title: {
text: 'Relative Intensity(%)'
}
},
legend: {
enabled: false
},
tooltip: {
pointFormat: '<b>{point.y:.1f} %</b>'
},
series: [{
name: 'Population',
data: data,
color: barColor,
events: {
click: function(event) {
//alert(event.point.name);
var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container","");
getInchiOnBar(index, event.point.x);
}
}
}]
});
chart[i].xAxis[0].categories = xLabels;
chart[i].data = data;
chart[i].srcdata = srcdata;
chart[i].max = result[0].map[i].max;
chart[i].xLabels = xLabels;
chart[i].quantification = result[0].map[i].meta.Quantification;
// piechartの追加
var pieParent = document.createElement('div');
pieParent.id = 'pieContainer' + i;
pieParent.setAttribute("order", i);
pieRoot.appendChild(pieParent);
piechart[i] = new Highcharts.Chart({
chart: {
plotBackgroundColor: null,
plotBorderWidth: null,
plotShadow: false,
type: 'pie',
renderTo: pieParent,
height: 250
},
title: {
text: (i+1) + '.ratio'
},
tooltip: {
pointFormat: '{series.name}: <b>{point.percentage:.1f}%</b>'
},
plotOptions: {
pie: {
allowPointSelect: true,
cursor: 'pointer',
dataLabels: {
enabled: true,
format: '<b>{point.name}</b>: {point.percentage:.1f} %',
style: {
color: (Highcharts.theme && Highcharts.theme.contrastTextColor) || 'black'
}
}
}
},
series: [{
name: 'Rate',
colorByPoint: true,
data: result[0].map[i].pie,
events: {
click: function(event) {
barColor = event.point.color;
var nextType = event.point.name;
var targets = '';
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < sortableList.childNodes.length; i ++){
var w = sortableList.childNodes[i].childNodes[1].innerHTML.replace(/^[0-9]+./,"").split("/");
targets += "," + w[0] + "/" + w[1] + "/" + nextType;
}
targets = targets.substring(1);
document.getElementById("showButton").disabled = true;
document.getElementById("bar") .disabled = true;
document.getElementById("heatmap") .disabled = true;
document.getElementById("sortableList").style.display = "none";
var sortableList = document.getElementById("sortableList");
for(var i = sortableList.childNodes.length-1; i >= 0; i --)
sortableList.removeChild(sortableList.childNodes[i]);
retrieveChartData(targets, 'bar');
}
}
}]
});
}
// それぞれのレート/全体でのレート
var ratioCbox = document.createElement("input");
ratioCbox.setAttribute("type", "checkbox");
ratioCbox.setAttribute("checked", "no");
ratioCbox.id = "ratio";
ratioCbox.onchange = function(e){
setBarchartData();
};
var label = document.createElement("label");
label.setAttribute("for", "ratio");
label.innerHTML = "ratio";
document.getElementById("rate").appendChild(ratioCbox);
document.getElementById("rate").appendChild(label);
resizeChart();
}
// ヒートマップ ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
var chart;
var gHeatmapData;
function getInchiOnHeatmap(seq, x, y) // 未使用
{
window.open("http://jcbl.jp/wiki/LBG" + gHeatmapData[seq].map[0].title.replace(/.*\//, "") + gHeatmapData[seq].x[x].replace("/","-"), "new");
// console.log(seq + "/" + y + "/" + x + " => " + gHeatmapData[seq][y][x]);
console.log(seq + "/" + y + "/" + x + " => " + gHeatmapData[seq].x[x].replace("/","-"));
}
function jumpToJcbl(inchi)
{
window.open("http://jcbl.jp/","new");
console.log(inchi);
}
// データの切り替え（表示/非表示、0-intensity) ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function setHeatmapData(index, seq)
{
var i = 0;
var length = gHeatmapData[index].map.length;
var target = [];
var cutoff = parseInt(document.getElementById("cutoffValue").value);
var xLabels = [];
for(var k = 0; k < gHeatmapData[index].map[0].data.length; k ++){
var not0 = false;
for(var j = 0; j < length; j ++){
if(gHeatmapData[index].map[j].data[k][0] >= cutoff){
not0 = true;
break;
}
}
target[k] = not0;
if(not0)
xLabels[i++] = gHeatmapData[index].x[k];
}
var data = [];
var yLabels = [];
chart[index].inchi = [];
i = 0;
// 表示されている中での最大値を取得する
var maxOfDisplayedAll = 0;
for(var j = 0; j < seq.length && j < length; j ++){
if(maxOfDisplayedAll < gHeatmapData[index].map[seq[j]].max)
maxOfDisplayedAll = gHeatmapData[index].map[seq[j]].max;
}
var max = 0;
for(var j = 0; j < seq.length && j < length; j ++){
if(document.getElementById("eachInRate").checked)
max = gHeatmapData[index].map[seq[j]].max;
else
max = maxOfDisplayedAll;
// max = gHeatmapData[index].maxOfAll; // 常に全ての最大値を基準にする場合はこちらを使う
chart[index].inchi[j] = [];
for(var k = 0,l = 0; k < gHeatmapData[index].map[seq[j]].data.length; k ++){
if(target[k]){
data[i] = [l++, seq.length-j-1, attrEscape(gHeatmapData[index].map[seq[j]].data[k][0] * 100 / max)];
chart[index].inchi[j][k] = inchiEscape(gHeatmapData[index].map[seq[j]].data[k][2]);
i ++;
}
}
yLabels[j] = (parseInt(seq[j])+1) + "." + attrEscape(gHeatmapData[index].map[seq[j]].title.replace(/\/[^\/]+$/, ""));
}
yLabels.reverse();
chart[index].zoomOut();
chart[index].series[0].setData(data, true);
chart[index].yAxis[0].setCategories(yLabels);
chart[index].xAxis[0].setCategories(xLabels);
}
// 表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function showHeatmap(result)
{
gHeatmapData = [];
var root = document.getElementById('container');
var sortableList = document.getElementById("sortableList");
chart = [];
gHeatmapData = result;
for(var i = 0; i < result.length; i ++){
// タイトル
var title = attrEscape(result[i].title);
// 親要素
var parent = document.createElement('div');
parent.id = 'container' + i;
root.appendChild(parent);
var index = 0;
var data = [];
var yLabels = [];
var length = result[i].map.length
var inchi = [];
for(var j = 0; j < length; j ++){
inchi[j] = [];
for(var k = 0; k < result[i].map[j].data.length; k ++){
data[index] = [k, length-j-1, attrEscape(result[i].map[j].data[k][0] * 100 / result[i].map[j].max)];
// data[index] = [k, length-j-1, attrEscape(result[i].map[j].data[k][0] * 100 / result[i].maxOfAll)];
inchi[j][k] = inchiEscape(result[i].map[j].data[k][2]);
index ++;
}
yLabels[j] = (j+1) + "." + attrEscape(result[i].map[j].title.replace(/\/[^\/]+$/, ""));
}
yLabels.reverse();
for(var j = 0; j < result[i].x.length; j ++)
result[i].x[j] = attrEscape(result[i].x[j]);
// create ignore 0-intensity button
document.getElementById("cutoffValue").onchange = function(){
// 表示/非表示の切り替え // 下と同じなので、後でまとめる
for(var index = 0; index < chart.length; index ++){
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}
setHeatmapData(index, sequence);
}
};
// create sortable list
var listDiv = document.createElement("div");
listDiv.id = "sortableList" + i;
for(var j = 0; j < result[i].map.length; j ++){
var line = document.createElement("div");
var cbox = document.createElement("input");
cbox.setAttribute("type", "checkbox");
cbox.setAttribute("checked", "yes");
cbox.setAttribute("seq", j);
cbox.id = "item" + j;
cbox.onchange = function(e){
// 表示/非表示の切り替え
var index = this.parentElement.parentElement.id.replace("sortableList", "");
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}
setHeatmapData(index, sequence);
};
line.appendChild(cbox);
var label = document.createElement("label");
label.setAttribute("for", "item" + j);
label.innerHTML = (j+1) + "." + escape(result[i].map[j].title);
line.appendChild(label);
listDiv.appendChild(line);
}
sortableList.appendChild(listDiv);
$('#sortableList' + i).sortable({
cursor: 'move',
update: function(event, ui){
var index = ui.item[0].parentElement.id.replace("sortableList", "");
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}
setHeatmapData(index, sequence);
}
});
$('#sortableList').sortable(false);
// それぞれのレート/全体でのレート
var rateCbox = document.createElement("input");
rateCbox.setAttribute("type", "checkbox");
rateCbox.setAttribute("checked", "yes");
rateCbox.id = "eachInRate";
rateCbox.onchange = function(e){
// rateの切り替え
var index = 0; // つであると仮定するので、複数ある場合は修正が必要なことに注意
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}
setHeatmapData(index, sequence);
};
var label = document.createElement("label");
label.setAttribute("for", "eachInRate");
label.innerHTML = "Each in rate";
document.getElementById("rate").appendChild(rateCbox);
document.getElementById("rate").appendChild(label);
// ヒートマップ
chart[i] = new Highcharts.Chart({
chart: {
type: 'heatmap',
zoomType: 'xy',
animation: 1,
marginBottom: 0,
plotBorderWidth: 1,
renderTo: parent,
animation: true,
},
scrollbar: {
enabled: true
},
title: {
text: title,
align: 'left'
},
xAxis: {
categories: result[i].x,
opposite: true,
labels: {
rotation: -90,
style: {
fontSize: '11px',
fontFamily: 'Verdana, sans-serif'
},
step: 1
},
},
yAxis: {
categories: yLabels,
title: null,
labels: {
step: 1
}
},
colorAxis: {
min: 0,
max: 100,
minColor: '#ffffff',
maxColor: Highcharts.getOptions().colors[8]
},
legend: {
align: 'right',
layout: 'vertical',
margin: 0,
verticalAlign: 'top',
y: 100,
symbolHeight: 145
},
tooltip: {
formatter: function () {
return this.series.yAxis.categories[this.point.y] + '<br />' +
this.series.xAxis.categories[this.point.x] + '<br />' +
(Math.round(this.point.value*10)/10) + ' %';
}
},
series: [{
name: 'HEK',
borderWidth: 1,
data: data,
dataLabels: {
enabled: false,
color: '#000000'
},
point: {
events: {
/*mouseOver: function() {
var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container", "");
var target = getTarget(this.series.chart.xAxis[0].labelGroup.element.childNodes, result[index].x[this.x]);
if(target != null){
target.css('fill', 'red');
target.css('fontWeight', 'bold');
}
$(this.series.chart.yAxis[0].labelGroup.element.childNodes[this.y]).css('fill', 'red');
$(this.series.chart.yAxis[0].labelGroup.element.childNodes[this.y]).css('fontWeight', 'bold');
},
mouseOut: function() {
var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container", "");
var target = getTarget(this.series.chart.xAxis[0].labelGroup.element.childNodes, result[index].x[this.x]);
if(target != null){
target.css('fill', '#666666');
target.css('fontWeight', '');
}
$(this.series.chart.yAxis[0].labelGroup.element.childNodes[this.y]).css('fill', '#666666');
$(this.series.chart.yAxis[0].labelGroup.element.childNodes[this.y]).css('fontWeight', '');
},*/
click: function(event){
// var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container","");
getInchiOnHeatmap(0, event.point.x, event.point.y);
// jumpToJcbl(event.point.series.chart.inchi[event.point.y][event.point.x]);
}
}
}
}]
});
chart[i].inchi = inchi;
//chart.setSize(600,300,false);
}
resizeChart();
}
// ※未使用※ ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function getTarget(children, target)
{
for(var i = 0; i < children.length; i ++){
if(target == children[i].childNodes[0].textContent){
return $(children[i]);
}
// console.log(children[i].childNodes[0].textContent);
}
return null;
}
