Category:MP
From Metabolomics.JP
Metabolic Pathways (代謝経路)
- Pathway:2-ketoglutarate_dehydrogenase_complex
- Pathway:4-aminobutyrate_degradation
- Pathway:Acetate_utilization
- Pathway:Acetoin_biosynthesis
- Pathway:Acetoin_biosynthesis_II
- Pathway:Alanine_degradation
- Pathway:Allantoin_degradation
- Pathway:Arginine_biosynthesis
- Pathway:Arginine_degradation
- Pathway:Arginine_degradation_(aerobic)
- Pathway:Arginine_degradation_(anaerobic)
- Pathway:Asparagine_biosynthesis
- Pathway:Asparagine_degradation
- Pathway:Aspartate_biosynthesis
- Pathway:Beta-alanine_biosynthesis
- Pathway:Biotin_biosynthesis
- Pathway:Butanediol_biosynthesis
- Pathway:Butanediol_degradation
- Pathway:Chitosan_biosynthesis
- Pathway:Chorismate_biosynthesis
- Pathway:Citrulline_biosynthesis
- Pathway:Cysteine_biosynthesis_from_homocysteine
- Pathway:De_novo_NAD_biosynthesis
- Pathway:De_novo_biosynthesis_of_purine_nucleotides
- Pathway:De_novo_biosynthesis_of_purine_nucleotides(deoxy-ATP)
- Pathway:De_novo_biosynthesis_of_purine_nucleotides(deoxy-GTP)
- Pathway:De_novo_biosynthesis_of_pyrimidine_deoxyribonucleotides
- Pathway:De_novo_biosynthesis_of_pyrimidine_ribonucleotides
- Pathway:Dehydro-D-arabinono-1,4-lactone_biosynthesis
- Pathway:Ergosterol_biosynthesis
- Pathway:Folate_biosynthesis_II
- Pathway:Folate_interconversions
- Pathway:Formaldehyde_oxidation_II_(glutathione-dependent)
- Pathway:Fructose_degradation
- Pathway:Galactose_degradation
- Pathway:Gluconeogenesis
- Pathway:Glutamate_biosynthesis_from_ammonia
- Pathway:Glutamate_biosynthesis_from_glutamine
- Pathway:Glutamate_degradation_I
- Pathway:Glutamate_degradation_IX
- Pathway:Glutamine_biosynthesis
- Pathway:Glutathione_biosynthesis
- Pathway:Glutathione_degradation
- Pathway:Glycerol_biosynthesis
- Pathway:Glycerol_degradation
- Pathway:Glycine_biosynthesis_from_glyoxylate
- Pathway:Glycine_biosynthesis_from_serine
- Pathway:Glycine_biosynthesis_from_threonine
- Pathway:Glycogen_biosynthesis
- Pathway:Glycolysis
- Pathway:Glyoxylate_cycle
- Pathway:Heme_biosynthesis
- Pathway:Hexaprenyl_diphosphate_biosynthesis
- Pathway:Histidine_biosynthesis
- Pathway:Homocysteine_and_cysteine_interconversion
- Pathway:Homocysteine_biosynthesis
- Pathway:Homoserine_biosynthesis
- Pathway:Isoleucine_biosynthesis
- Pathway:Isoleucine_degradation
- Pathway:L-serine_degradation
- Pathway:Leucine_biosynthesis
- Pathway:Leucine_degradation
- Pathway:Lysine_biosynthesis
- Pathway:Lysine_degradation_III
- Pathway:Mannose_degradation
- Pathway:Methionine_biosynthesis
- Pathway:Methionine_salvage_pathway
- Pathway:Methylglyoxal_catabolism
- Pathway:Mevalonate_pathway
- Pathway:Myo-inositol_biosynthesis
- Pathway:NAD_salvage_pathway
- Pathway:Nicotinamide_riboside_salvage_pathway_I
- Pathway:Nicotinamide_riboside_salvage_pathway_II
- Pathway:Nicotinate_riboside_salvage_pathway_I
- Pathway:Nicotinate_riboside_salvage_pathway_II
- Pathway:Non-oxidative_branch_of_the_pentose_phosphate_pathway
- Pathway:Oxidative_branch_of_the_pentose_phosphate_pathway
- Pathway:P-hydroxybenzoate_biosynthesis
- Pathway:Pantothenate_and_coenzyme_A_biosynthesis
- Pathway:Periplasmic_NAD_degradation
- Pathway:Phenylalanine_biosynthesis
- Pathway:Phenylalanine_degradation
- Pathway:Proline_biosynthesis
- Pathway:Proline_utilization
- Pathway:Putrescine_biosynthesis
- Pathway:Pyridoxal_5'-phosphate_salvage_pathway
- Pathway:Riboflavin,_FMN_and_FAD_biosynthesis
- Pathway:S-adenosylmethionine_biosynthesis
- Pathway:S-adenosylmethionine_cycle
- Pathway:Serine_biosynthesis_from_3-phosphoglycerate
- Pathway:Serine_biosynthesis_from_glyoxylate
- Pathway:Siroheme_biosynthesis
- Pathway:Spermidine_and_methylthioadenosine_biosynthesis
- Pathway:Spermine_and_methylthioadenosine_biosynthesis
- Pathway:Sucrose_degradation
- Pathway:Sulfate_assimilation_pathway
- Pathway:TCA_cycle,_aerobic_respiration
- Pathway:Tetrapyrrole_biosynthesis
- Pathway:Threonine_biosynthesis
- Pathway:Trehalose_biosynthesis
- Pathway:Trehalose_degradation
- Pathway:Tryptophan_biosynthesis
- Pathway:Tryptophan_degradation
- Pathway:Tryptophan_degradation_via_kynurenine
- Pathway:Tyrosine_biosynthesis
- Pathway:Tyrosine_degradation
- Pathway:UDP-N-acetylglucosamine_biosynthesis
- Pathway:Ubiquinone_biosynthesis
- Pathway:Valine_biosynthesis
- Pathway:Valine_degradation
Pathway name (* not created, ! incomplete) Num. of Reactions Linked Pathways comments 2-ketoglutarate dehydrogenase complex 3 4-aminobutyrate degradation 2 ! myo-inositol biosynthesis 2 mapping acetate utilization 1 acetoin biosynthesis 3 glycolysis acetoin biosynthesis II butanediol biosynthesis valine biosynthesis ! acetoin biosynthesis II 2* glycolysis acetoin biosynthesis butanediol biosynthesis mapping alanine degradation 1 allantoin degradation 5 arginine biosynthesis 8 arginine degradation (aerobic) 6 arginine degradation (anaerobic) 4 asparagine biosynthesis 2 asparagine degradation 2 aspartate biosynthesis 2 2 glycolysis homoserine biosynthesis ! beta-alanine biosynthesis 2 spermidine and methylthioadenosine biosynthesispantothenate and coenzyme A biosynthesis ? Spermine -> Amino-propion aldehyde mapping biotin biosynthesis 4 butanediol biosynthesis 1 acetoin biosynthesis acetoin biosynthesis II butanediol degradation 1 butanediol biosynthesis * CDP-diacylglycerol biosynthesis * chitin biosynthesis chitosan biosynthesis 1 chorismate biosynthesis 7 folate biosynthesis tyrosine biosynthesis tryptophan biosynthesis phenylalanine biosynthesis citrulline biosynthesis 2 arginine biosynthesis cysteine biosynthesis from homocysteine 2 homocysteine biosynthesis glutathione biosynthesis * cysteine biosynthesis/homocysteine degradation cysteine biosynthesis from homocysteine と同じ de novo biosynthesis of purine nucleotides 10 De novo biosynthesis of purine nucleotides(deoxy-ATP) de novo biosynthesis of purine nucleotides(deoxy-GTP) IMP --> deoxy-ATP, IMP --> deoxy-GTP は別ページ ! Pathway:De novo biosynthesis of purine nucleotides(deoxy-ATP) 5 de novo biosynthesis of purine nucleotides ATP -> dATP なし ! Pathway:De novo biosynthesis of purine nucleotides(deoxy-GTP) 5 de novo biosynthesis of purine nucleotides GTP -> dGTP なし ! de novo biosynthesis of pyrimidine deoxyribonucleotides 4 UDPからdUTPを追加 CDP or dCMP --> dUTP は描いていない de novo biosynthesis of pyrimidine ribonucleotides 9 de novo NAD biosynthesis 9 NAD salvage pathway Nicotinamide riboside salvage pathway I dehydro-D-arabinono-1,4-lactone biosynthesis 2 * dolichyl glucosyl phosphate biosynthesis * dolichyl phosphate D-mannose biosynthesis ! ergosterol biosynthesis 12 lanosterol まで * fatty acid biosynthesis, initial steps * fatty acid elongation, saturated * fatty acid elongation, unsaturated * fatty acid oxidation pathway * folate biosynthesis folate biosynthesis II と folate interconversions をあわせたもの ! folate biosynthesis II 8 folate interconversions folate polyglutamylation chorismate からの経路なし ! folate interconversions 5 folate polyglutamylation de novo biosynthesis of pyrimidine deoxyribonucleotides folate biosynthesis de novo biosynthesis of purine nucleotides 5-methyl-THF への経路なし * folate polyglutamylation * folate transformations ! formaldehyde oxidation II (glutathione-dependent) 4 mapping fructose degradation 1 glycolysis ! galactose degradation 3 UDP-D-galactose まで ! gluconeogenesis 9 malate -> pyruvate -> oxaloacetic acid の経路なし glutamate biosynthesis from ammonia 1 amino acids biosynthesis folate bio synthesis glutamine biosynthesis glutamate biosynthesis from glutamine 1 glutamine biosynthesis glutamate degradation I 3 glutamate degradation IX 1 glutamine biosynthesis 1 glutamate biosynthesis from glutamine glutathione biosynthesis 2 cysteine biosynthesis from homocysteine glutathione degradation glycine biosynthesis from serine glutamatesynthesis glutathione degradation 2 glutathione biosynthesis * glutathione-glutaredoxin redox reactions * glutathione-glutaredoxin system glycerol biosynthesis 2 glycolysis glycerol degradation 2 glycolysis gluconeogenesis glycine biosynthesis from glyoxylate 1 glyoxylate cycle serine biosynthesis from glyoxylate glycine biosynthesis from serine 1 serine biosynthesis from 3-phosphoglycerate glutathione biosynthesis glycine biosynthesis from threonine 1 threonine biosynthesis * glycine cleavage complex * glycogen biosynthesis * glycogen catabolism glycolysis 8 pentose phosphate pathway superpathway of acetoin and butanediol biosynthesis fructose degradation glycerol biosynthesis glyoxylate cycle 6 TCA cycle gluconeogenesis glycine biosynthesis from glyoxylate heme biosynthesis 4 tetrapyrrole biosynthesis ! hexaprenyl diphosphate biosynthesis 3 Geranylgeranyl diphosphate まで histidine biosynthesis 10 homocysteine and cysteine interconversion 2 homocysteine biosynthesis homocysteine biosynthesis 2 homoserine biosynthesis methionine biosynthesis homocysteine and cysteine interconversion cysteine biosynthesis from homocysteine homoserine biosynthesis 3 aspartate biosynthesis threonine biosynthesis homocysteine biosynthesis * inositol phosphate biosynthesis isoleucine biosynthesis 5 ! isoleucine degradation 2 2-methylbutanal まで mapping L-serine degradation 1 leucine biosynthesis 4 mapping ! leucine degradation 3 mapping * lipases biosynthesis * lipid-linked oligosaccharide biosynthesis lysine biosynthesis 8 ! lysine degradation III 6 mapping mannose degradation 2 glycolysis ! methionine biosynthesis 1 homocysteine biosynthesis S-adenosylmethionine biosynthesis 左側のみ ! methionine salvage pathway 6 spermine and methylthioadenosine biosynthesis spermidine and methylthioadenosine biosynthesis S-adenosylmethionine biosynthesis mapping methylglyoxal catabolism 2 ! mevalonate pathway 7 mapping NAD salvage pathway 5 nicotinamide riboside salvage pathway I nicotinamide riboside salvage pathway II nicotinate riboside salvage pathway II nicotinate riboside salvage pathway I de novo NAD biosynthesis nicotinamide riboside salvage pathway I 2 nicotinamide riboside salvage pathway II de novo NAD biosynthesis NAD salvage pathway nicotinamide riboside salvage pathway II 1 nicotinamide riboside salvage pathway I NAD salvage pathway ********** nicotinate riboside salvage pathway I 1 nicotinate riboside salvage pathway II NAD salvage pathway nicotinate riboside salvage pathway II 1 nicotinate riboside salvage pathway I NAD salvage pathway ! non-oxidative branch of the pentose phosphate pathway 4 D-Ribulose 5-phosphate -> D-Xylulose 5-phosphate -> D-Sedoheptulose 7-phosphate -> D-Erythrose 4-phosphate oxidative branch of the pentose phosphate pathway 3 ! p-hydroxybenzoate biosynthesis 6 mapping chorismate -> p-hydroxybenzoate なし ! pantothenate and coenzyme A biosynthesis 8 spermine からの経路なし * pentose phosphate pathway Oxidative branch of the pentose phosphate pathway と non-oxidative branch of the pentose phosphate pathway periplasmic NAD degradation 2 phenylalanine biosynthesis 3 chorismate biosynthesis phenylalanine degradation 3 * phosphatidic acid and phospholipid biosynthesis * phosphatidic acid biosynthesis * phosphatidylinositol biosynthesis * phosphatidylinositol phosphate biosynthesis * phospholipid biosynthesis * phospholipid biosynthesis (Kennedy pathway) * phospholipid biosynthesis II (Kennedy pathway) proline biosynthesis 4 proline utilization 2 * protein modifications putrescine biosynthesis 1 spermidine and methylthioadenosine biosynthesis ! pyridoxal 5'-phosphate salvage pathway 2 左側のみ * pyruvate dehydrogenase complex * removal of superoxide radicals riboflavin, FMN and FAD biosynthesis 8 Biochemical Pathways に従った S-adenosylmethionine biosynthesis 1 methionine biosynthesis spermine and methylthioadenosine biosynthesis spermidine and methylthioadenosine biosynthesis S-adenosylmethionine cycle S-adenosylmethionine cycle に含まれる。 S-adenosylmethionine cycle 4 * salvage pathways of adenine, hypoxanthine and their nucleosides * salvage pathways of guanine, xanthine and their nucleosides * salvage pathways of purines and their nucleosides * salvage pathways of pyrimidine deoxyribonucleotides * salvage pathways of pyrimidine ribonucleotides serine biosynthesis from 3-phosphoglycerate 3 glycolysis cysteine biosynthesis from homocysteine glycine biosynthesis from serine serine biosynthesis from glyoxylate 1 glycine biosynthesis from glyoxylate ! siroheme biosynthesis 3 tetrapyrrole biosynthesis mapping ! spermidine and methylthioadenosine biosynthesis 1 SAM 側は描いてない ! spermine and methylthioadenosine biosynthesis 1 SAM 側は描いてない * sphingolipid metabolism ! sucrose degradation 1 fructose degradation superpathway of glucose fermentation Sucrose -> D-Glucose を描いた sulfate assimilation pathway 4 homocysteine biosynthesis * superpathway of acetoin and butanediol biosynthesis * superpathway of chorismate * superpathway of glucose fermentation * superpathway of glutamate biosynthesis * superpathway of glutathione metabolism (truncated γ-glutamyl cycle) * superpathway of heme and siroheme biosynthesis * superpathway of histidine, purine, and pyrimidine biosynthesis * superpathway of leucine, isoleucine, and valine biosynthesis * superpathway of methionine biosynthesis * superpathway of methionine salvage pathway * superpathway of NAD biosynthesis * superpathway of phenylalanine, tyrosine and tryptophan biosynthesis * superpathway of phospholipid biosynthesis * superpathway of polyamine biosynthesis * superpathway of purine biosynthesis and salvage pathways * superpathway of serine and glycine biosynthesis * superpathway of sulfur amino acid biosynthesis * superpathway of TCA cycle and glyoxylate cycle * superpathway of threonine and methionine biosynthesis * superpathway of threonine biosynthesis * superpathway of ubiquinone biosynthesis TCA cycle, aerobic respiration 10 tetrapyrrole biosynthesis 3 heme biosynthesis * thioredoxin system threonine biosynthesis 2 homoserine biosynthesis * threonine degradation trehalose biosynthesis 2 trehalose degradation 1 * triglyceride biosynthesis tryptophan biosynthesis 5 chorismate biosynthesis tryptophan degradation 3 tryptophan degradation via kynurenine 7 tyrosine biosynthesis 3 chorismate biosynthesis tyrosine degradation 3 ! ubiquinone biosynthesis 7 UDP-N-acetylglucosamine biosynthesis 4 chitin biosynthesis valine biosynthesis 4 glycolysis pantothenate and coenzyme A biosynthesis leucine biosynthesis valine degradation 3 * very long chain fatty acid biosynthesis
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