Category:TP

From Metabolomics.JP
(Difference between revisions)
Jump to: navigation, search
m
Line 6: Line 6:
 
}}
 
}}
  
==Design of Flavonoid ID numbers ID番号の設計==
+
==Design of Triterpene ID numbers ID番号の設計==
 
<center>
 
<center>
 
12-DIGIT
 
12-DIGIT
Line 13: Line 13:
 
<td style="background-color:green;" width=15px align="center"><big>T</big>
 
<td style="background-color:green;" width=15px align="center"><big>T</big>
 
<td style="background-color:green;" width=15px align="center"><big>P</big>
 
<td style="background-color:green;" width=15px align="center"><big>P</big>
<td style="background-color:darkseagreen;" width=15px align="center"><big>''x''</big>
+
<td style="background-color:green;" width=15px align="center"><big>3</big>
 
<td style="background-color:darkseagreen;" width=15px align="center"><big>''x''</big>
 
<td style="background-color:darkseagreen;" width=15px align="center"><big>''x''</big>
 
<td style="background-color:tomato;" width=15px align="center"><big>''y''</big>
 
<td style="background-color:tomato;" width=15px align="center"><big>''y''</big>
Line 19: Line 19:
 
<td style="background-color:firebrick;" width=15px align="center"><big>''r''</big>
 
<td style="background-color:firebrick;" width=15px align="center"><big>''r''</big>
 
<td style="background-color:firebrick;" width=15px align="center"><big>''h''</big>
 
<td style="background-color:firebrick;" width=15px align="center"><big>''h''</big>
<td style="background-color:green;" width=15px align="center"><big>''g''</big>
+
<td style="background-color:orange;" width=15px align="center"><big>''g''</big>
<td style="background-color:white;" width=15px align="center"><big>''n''</big>
+
<td style="background-color:orange;" width=15px align="center"><big>''n''</big>
 
<td style="background-color:white;" width=15px align="center"><big>''c''</big>
 
<td style="background-color:white;" width=15px align="center"><big>''c''</big>
 
<td style="background-color:white;" width=15px align="center"><big>''c''</big>
 
<td style="background-color:white;" width=15px align="center"><big>''c''</big>
Line 28: Line 28:
 
; ''x'' ... species information:
 
; ''x'' ... species information:
 
{| class="wikitable"
 
{| class="wikitable"
! symbol || kingdom
+
! Symbol at ''x'' || Kingdom || Phyla || Examples
 
|-
 
|-
| ''CS'' [[:Category:TPST|common structures]] ||
+
|align="center"| '''C'''
 +
| All
 +
| [[:Category:TPC|common structures]]
 +
 
 +
| lanosterol, cholesterol
 
|-
 
|-
| ''AI'' [[:Category:TPAI|insects]]
+
|align="center"| '''I'''
|rowspan="3"| animalia
+
|rowspan="3"| Animalia
 +
| [[:Category:TPI|Arthropoda]] (insects, crabs)
 +
| ecdysteroids
 
|-
 
|-
| ''AV'' [[:Category:TPAV|vertabrates]]
+
|align="center"| '''V'''
 +
| [[:Category:TPV|Chordate]] (vertebrates)
 +
| sex steroids, corticosteroids, anabolic steroids
 
|-
 
|-
| ''AO'' [[:Category:TPAO|others]]
+
|align="center"| '''O'''
 +
| [[:Category:TPO|others]]
 +
| marine steroids
 
|-
 
|-
| ''PP'' [[:Category:TPPP|phytosterols]]
+
|align="center"| '''P'''
|rowspan="3"| plantae
+
|rowspan="2"| Plantae
 +
| [[:Category:TPP|phytosterols]]
 +
| phytosterols, brassinolides
 
|-
 
|-
| ''PS'' [[:Category:TPPS|saponins]]
+
|align="center"| '''S'''
 +
| [[:Category:TPS|saponins]]
 +
| saponins
 
|-
 
|-
| ''PB'' [[:Category:TPPB|brassinolides]]
+
|align="center"| '''F'''
 +
| Fungi
 +
| [[:Category:TPF|ergosterols]]
 +
| ergosterols
 
|-
 
|-
| ''FE'' [[:Category:TPFE|ergosterols]] || fungi
+
|align="center"| '''B'''
 +
| Bacteria
 +
| [[:Category:TPB|bacterial sterols]]
 +
| hopanoids
 
|}
 
|}
  
 
; ''y'' ... backbone structure (母核構造) :
 
; ''y'' ... backbone structure (母核構造) :
{|
+
<table><tr valign="top"><td>
 +
{| class="wikitable sortable"
 +
! Symbol at ''y'' || Carbons || Steroidal
 
|-
 
|-
| C17 || ''GN'' gonane
+
| ''GN''  
 +
| C17 || gonane
 
|-
 
|-
| C18 || ''ES'' estrane
+
| ''ES''  
 +
| C18 || estrane
 
|-
 
|-
| C19 || ''AD'' androstane
+
| ''AD''
 +
| C19 || androstane
 
|-  
 
|-  
| C21 || ''PG'' pregnane
+
| ''PG''
 +
| C21 || pregnane
 +
|-
 +
| ''CA''
 +
| C24 || cholane
 +
|-
 +
| ''CL''
 +
| C27 || cholestane
 +
|-
 +
| ''CM''
 +
| C28 || campestane
 +
|-
 +
| ''EG''
 +
| C28 || ergostane
 +
|-
 +
| ''SG''
 +
| C29 (4 rings) || stigmastane
 +
|-
 +
| ''PR''
 +
| C29 (4 rings) || poriferastane
 +
|}</td><td>
 +
{| class="wikitable sortable"
 +
! Symbol at ''y'' || Carbons || Plant-derived
 +
|-
 +
| ''LN''
 +
| C30 (4 rings) || lanostane
 +
|-
 +
| ''CY''
 +
| C30 (4 rings) ||cycloartane
 +
|-
 +
| ''BC''
 +
| C30 (4 rings) ||baccharane
 +
|-
 +
| ''CC''
 +
| C30 (4 rings) ||cucurbitane
 +
|-
 +
| ''DM''
 +
| C30 (4 rings) ||dammarane
 +
|-
 +
| ''HL''
 +
| C30 (4 rings) ||holostane
 
|-
 
|-
| C24 || ''CA'' cholane
+
| ''PF''
 +
| C29 (5 rings) || pfaffane
 
|-
 
|-
| C27 || ''CL'' cholestane
+
| ''HP''
 +
| C30 (5 rings) || hopane
 
|-
 
|-
| C28 || ''CM'' campestane; ''EG'' ergostane
+
| ''LP''
 +
| C30 (5 rings) || lupane
 
|-
 
|-
| C29 (4 rings) || ''SG'' stigmastane; ''PF'' poriferastane;
+
| ''OL''
 +
| C30 (5 rings) || oleanane
 
|-
 
|-
| C29 (5 rings) || ''PF'' pfaffane;
+
| ''SR''
 +
| C30 (5 rings) || serratane
 
|-
 
|-
| C30 (4 rings) || ''LN'' lanostane; ''CY'' cycloartane; ''BC'' baccharane; ''CC'' cucurbitane; ''DM'' dammarane; ''HL'' holostane; 
+
| ''TR''
 +
| C30 (5 rings) || taraxastane
 
|-
 
|-
| C30 (5 rings) || ''HP'' hopane; ''LP'' lupane; ''OL'' oleanane; ''SR'' serratane; ''TR'' taraxastane; ''UR'' ursane;
+
| ''UR''
 +
| C30 (5 rings) || ursane
 
|}
 
|}
 +
</td></tr></table>
  
 
; ''r'' ... number of major rings (環構造数) :
 
; ''r'' ... number of major rings (環構造数) :

Revision as of 09:17, 21 July 2010

Triterpenes

Triterpenes are synthesized from squalene, which is formed by tail-to-tail conjugation of two farnesyl biphosphates (FPP), formed from mevalonate.

Design of Triterpene ID numbers ID番号の設計

12-DIGIT

T P 3 x y y r h g n c c
x ... species information
Symbol at x Kingdom Phyla Examples
C All common structures lanosterol, cholesterol
I Animalia Arthropoda (insects, crabs) ecdysteroids
V Chordate (vertebrates) sex steroids, corticosteroids, anabolic steroids
O others marine steroids
P Plantae phytosterols phytosterols, brassinolides
S saponins saponins
F Fungi ergosterols ergosterols
B Bacteria bacterial sterols hopanoids
y ... backbone structure (母核構造) 
Symbol at y Carbons Steroidal
GN C17 gonane
ES C18 estrane
AD C19 androstane
PG C21 pregnane
CA C24 cholane
CL C27 cholestane
CM C28 campestane
EG C28 ergostane
SG C29 (4 rings) stigmastane
PR C29 (4 rings) poriferastane
Symbol at y Carbons Plant-derived
LN C30 (4 rings) lanostane
CY C30 (4 rings) cycloartane
BC C30 (4 rings) baccharane
CC C30 (4 rings) cucurbitane
DM C30 (4 rings) dammarane
HL C30 (4 rings) holostane
PF C29 (5 rings) pfaffane
HP C30 (5 rings) hopane
LP C30 (5 rings) lupane
OL C30 (5 rings) oleanane
SR C30 (5 rings) serratane
TR C30 (5 rings) taraxastane
UR C30 (5 rings) ursane
r ... number of major rings (環構造数) 

Click above categories to see details.

h ... hydroxylation pattern (水酸基数) 

Click above categories to see details.

g ... glycosylation pattern(糖修飾パターン) 

Click above categories to see details.

n ... number of sugars (修飾糖数) 

Click above categories to see details.

c ... serial number (通し番号)

This category currently contains no pages or media.

Personal tools
Namespaces

Variants
Actions
Navigation
metabolites
Toolbox