PKS:Fung070

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|CDD=KS-AT-PP-PP-TE
 
|CDD=KS-AT-PP-PP-TE
 
|class=NRPKS
 
|class=NRPKS
−
|reliability=
+
|reliability=identified
 
|description=polyketide synthase [Colletotrichum lagenarium]
 
|description=polyketide synthase [Colletotrichum lagenarium]
 
|information=involved in melanin biosynthesis in Colletotrichum lagenarium. Possible domain architecture: SAT-KS-AT-PT-ACP-ACP-TE/CLC
 
|information=involved in melanin biosynthesis in Colletotrichum lagenarium. Possible domain architecture: SAT-KS-AT-PT-ACP-ACP-TE/CLC

Revision as of 20:46, 8 May 2012

Polyketide Top Species List UniRef90 Class UniRef50 Class Gene Class Domains
(by CDD) 		Domains
(by MAPSI)
Colletotrichum lagenarium (GenBank BAA18956) all species
Class NRPKS (length: 2187) all classes   Class 11.NRPKS_I(4a)melanin in KS domain phylogeny Reliability identified
Product melanin GeneName pks1
UniProt,UniRef90 [1] , [2] UniRef50 [3]
Domain by MAPSI KS-AT-ACP-ACP-CYC

(notation help / all patterns)

Domain by CDD KS-AT-PP-PP-TE

(notation help / all patterns)

Domain by ITER-DB {{{ITERDB}}}

(notation help / all patterns)

Estimated Domain
Description polyketide synthase [Colletotrichum lagenarium]
Information involved in melanin biosynthesis in Colletotrichum lagenarium. Possible domain architecture: SAT-KS-AT-PT-ACP-ACP-TE/CLC
References
  • Fisch KM, Gillaspy AF, Gipson M, Henrikson JC, Hoover AR, Jackson L, Najar FZ, Wagele H, Cichewicz RH: Chemical induction of silent biosynthetic pathway transcription in aspergillus niger. J Ind Microbiol Biotechnol 36(9):1199-1213, 2009
  • Li Y, Image, II, Xu W, Image I, Tang Y: Classification, prediction, and verification of the regioselectivity of fungal polyketide synthase product template domains. J Biol Chem 285(30):22764-22773, 2010
  • Takano Y, Kubo Y, Shimizu K, Mise K, Okuno T, Furusawa I: Structural analysis of pks1, a polyketide synthase gene involved in melanin biosynthesis in colletotrichum lagenarium. Mol Gen Genet 249(2):162-167, 1995
  • Valarmathi R, Hariharan GN, Venkataraman G, Parida A: Characterization of a non-reducing polyketide synthase gene from lichen dirinaria applanata. Phytochemistry 70(6):721-729, 2009
  • Varga J, Rigo K, Kocsube S, Farkas B, Pal K: Diversity of polyketide synthase gene sequences in Aspergillus species. Res Microbiol 154:593-600, 2003
Link AspGD

This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)

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