BM All

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==Category description==
 
==Category description==
 
This page introduces a hierarchical classification of basic metabolites.
 
This page introduces a hierarchical classification of basic metabolites.
 +
<br>
 +
Class Description
 +
{{ClassifiedTable|1=
 +
  BMIO && Inorganic Chemcals && Metals, Halogens, Nitrogen, Sulfur, Phosphorus compounds
 +
&& BMAA && Amino acids && Basic amino acids(composing protein), their modified form(excluding carbon chain modification) and their isomeric form
 +
&& BMAD && Amino acids derivatives && Amino acids(excluding basic a.a.), Basic a.a. with additional carbon chain and Peptides
 +
&& BMFY && Fatty Acyl and Related Molecules && Carboxylic acid, Aldehyde, Alcohol, Amine, Phosphate, Sulfate and so on
 +
&& BMMC && mono-cyclic or asssembled cyclic molecules && benzene, pyrimidine, pyridine, imidazole, thiazole, quinone, retinol, pyrrolidin, lacton, aliphatic cyclic, hetero cyclic, asembled
 +
&& BMCC && conjugated cyclic molecules && purine, pteridine, porphyrin, indole, tocopherol, quinoline, naphthalen, condensed ring, bridged structure
 +
&& BMxx && others && other metabolite related molecules
 +
}}
 +
  
 +
Basic metabolites ID list
 
{{ClassifiedTable|1=
 
{{ClassifiedTable|1=
−
BM && basic metabolites (including organic acids, ketones, alcohols, hydrocarbons, and DNA bases) &&
+
BMIO && BMIOOX && oxidized elements &&&& BMIOMT && metals and halogens (and other atomic elements) &&  
−
&& '''BMIO''' && '''inorganics''' && 61
+
    && BMIONT && nitrogen compounds &&  
−
&& BMIOOX && oxidized elements && 6
+
    && BMIOPP && phosphates &&  
−
&& BMIOMT && metals and halogens (and other atomic elements) && 34
+
    && BMIOSF && sulfates &&  
−
&& BMIONT && nitrogen compounds && 10
+
BMAA && BMAASn && straight-chain amino acids(with carbon chain length:n) &&
−
&& BMIOPP && phosphates && 5
+
    && BMAABn && branched-chain amino acids(with carbon chain length:n) &&
−
&& BMIOSF && sulfates && 6
+
    && BMAACC && cyclic and aromatic amino acids &&
−
&& '''BMAA''' && '''amino acids''' && 103
+
    && BMAACCBZ && cyclic and aromatic amino acids with benzene ring &&
−
&& BMAAS && straight-chain amino acids && 60
+
    && BMAACCID && cyclic and aromatic amino acids with indole ring &&
−
&& BMAAS2 && straight-chain amino acids (C:2) && 1
+
    && BMAACCPL && cyclic and aromatic amino acids with pyrrolidine ring &&
−
&& BMAAS3 && straight-chain amino acids (C:3) && 19
+
    && BMAACCIZ && cyclic and aromatic amino acids with imidazole ring &&
−
&& BMAAS4 && straight-chain amino acids (C:4) && 16
+
BMAD && BMADSn && straight-chain amino acid derivatives(with carbon chain length:n) &&
−
&& BMAAS5 && straight-chain amino acids (C:5) && 16
+
    && BMADBn && branched-chain a.a. derivatives(with carbon chain length:n) &&
−
&& BMAAS6 && straight-chain amino acids (C:6) && 8
+
    && BMADCC && cyclic and aromatic a.a. derivatives &&
−
&& BMAAB && branched-chain amino acids && 18
+
    && BMADCCBZ && a.a. derivatives with benzene ring &&
−
&& BMAAB2 && branched-chain amino acids (C:2) && 1
+
    && BMADCD && a.a. derivatives with indole ring &&
−
&& BMAAB3 && branched-chain amino acids (C:3) && 1
+
    && BMADCZ && a.a. derivatives with imidazole ring &&
−
&& BMAAB4 && branched-chain amino acids (C:4) && 7
+
    && BMADCX && a.a. derivatives with other cyclic molecules &&
−
&& BMAAB5 && branched-chain amino acids (C:5) && 7
+
    && BMADDP && dipeptide &&
−
&& BMAAB6 && branched-chain amino acids (C:6) && 2
+
    && BMADTP && tripeptide &&
−
&& BMAAC && cyclic and aromatic amino acids && 25
+
BMFY && BMFYSn && straight-chain molecules(with carbon chain length:n) &&
−
&& BMAACB && cyclic and aromatic amino acids with benzene ring && 7
+
    && BMFYBn && branched-chain molecules(with carbon chain length:n) &&
−
&& BMAACD && cyclic and aromatic amino acids with indole ring && 4
+
BMxx && other metabolite related molecules &&
−
&& BMAACP && cyclic and aromatic amino acids with pyrrolidine ring && 10
+
    && BMxxSx && CO2, CH4 and so on &&
−
&& BMAACZ && cyclic and aromatic amino acids with imidazole ring && 4
+
    && BMxxBx && Trimethyl-amine, Isobutyro-nitrile and so on &&
−
&& '''BMAD''' && '''amino acid derivatives including peptides''' && 123
+
BMMC && mono-cyclic or cyclic assembled molecules &&
−
&& BMADS && straight-chain amino acid derivatives && 4
+
    && BMMCBZ && with benzene ring  &&
−
&& BMADS4 && straight-chain amino acid derivatives (C:4) && 1
+
    && BMMCBZ && with benzene ring (Substituent = 0-1,2o,2m,2p,3,4-6) &&
−
&& BMADS5 && straight-chain amino acid derivatives (C:5) && 1
+
    && BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) &&
−
&& BMADS6 && straight-chain amino acid derivatives (C:6) && 1
+
    && BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) &&
−
&& BMADS7 && straight-chain amino acid derivatives (C:7) && 1
+
    && BMMCPYCT && with Cytosine &&
−
&& BMADB && branched-chain amino acid derivatives && 63
+
    && BMMCPYTY && with Thymine &&
−
&& BMADB2 && branched-chain amino acid derivatives (C:2) && 7
+
    && BMMCPYUR && with Uracil &&
−
&& BMADB3 && branched-chain amino acid derivatives (C:3) && 5
+
    && BMMCPYXX && Others &&
−
&& BMADB4 && branched-chain amino acid derivatives (C:4) && 19
+
    && BMMCIZ && with imidazole ring  &&
−
&& BMADB5 && branched-chain amino acid derivatives (C:5) && 24
+
    && BMMCTZ && with thiazole ring (thiamine) &&
−
&& BMADB6 && branched-chain amino acid derivatives (C:6) && 8
+
    && BMMCVA && with retinol ring (vitamin A)  &&
−
&& BMADC && cyclic and aromatic amino acid derivatives && 34
+
    && BMMCQN && with Quinone &&
−
&& BMADCB && cyclic and aromatic amino acid derivatives with benzene ring && 23
+
    && BMMCPL && with Pyrrolidine &&
−
&& BMADCD && cyclic and aromatic amino acid derivatives with indole ring && 1
+
    && BMMCLA && with lacton &&
−
&& BMADCZ && cyclic and aromatic amino acid derivatives with imidazole ring && 5
+
    && BMMCAC && alicyclic molecules &&
−
&& BMADCX && cyclic and aromatic amino acid derivatives with other cyclic molecules && 5
+
    && BMMCACCH && cyclohexan &&
−
&& BMADDP && dipeptide && 19
+
    && BMMCACEN && cyclohexen &&
−
&& BMADTP && tripeptide && 3
+
    && BMMCACDE && cyclohexadien &&
−
&& '''BMFY''' && '''fatty acyl molecules''' &&
+
    && BMMCACxx && others &&
−
&& BMFYSn && straight-chain molecules<br>carbon chain length Cn &&
+
    && BMMCHE && hetero aromatic molecules &&
−
&& BMFYBC && branched-chain molecules &&
+
    && BMMCAS && assembled &&
−
&& BMFYBn && alkyl,carbonyl branches<br>carbon chain length Cn &&
+
BMCC && conjugated cyclic molecules &&
−
&& BMFYBC && ester,amine,amide,phosphate,sulfide,complexed &&
+
    && BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) &&
−
&& BMxx && other metabolite related molecules &&
+
    && BMCCPUCA && with CoA &&
−
&& BMxxSx && CO2, CH4 and so on &&
+
    && BMCCPUAD && with Adenine &&
−
&& BMxxBx && Trimethyl-amine, Isobutyro-nitrile and so on &&
+
    && BMCCPUGU && with Guanine &&
−
&& '''BMMC''' && '''mono-cyclic or cyclic assembled molecules''' && 628
+
    && BMCCPUIN && with Inosine &&
−
&& BMMCBZ && with benzene ring  && 230
+
    && BMCCPUXX && others(Xanthine) &&
−
&& BMMCBZ && with benzene ring (Substituent = 0-1,2o,2m,2p,3,4-6) && 48,(34,12,60),59,15
+
    && BMCCPT && with pteridine ring (pterin, flavine ...)  &&
−
&& BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) && 38
+
    && BMCCPTFL && with Flavin &&
−
&& BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) && 120
+
    && BMCCPTFO && with Folic acid &&
−
&& BMMCPYCT && with Cytosine && 26
+
    && BMCCPTPD && with Pteridine &&
−
&& BMMCPYTY && with Thymine && 19
+
    && BMCCPTPT && with Pterine &&
−
&& BMMCPYUR && with Uracil && 49
+
    && BMCCPP && with porphyrin ring (V12, cobalamine, heme) &&
−
&& BMMCPYXX && Others && 17
+
    && BMCCVE && with tocopherol ring (vitamin E)  &&
−
&& BMMCIZ && with imidazole ring  && 34
+
    && BMCCID && with indole ring &&
−
&& BMMCTZ && with thiazole ring (thiamine) && 3
+
    && BMCCQL && with quinoline &&
−
&& BMMCVA && with retinol ring (vitamin A)  && 4
+
    && BMCCNP && with Naphthalen &&
−
&& BMMCQN && with Quinone && 26
+
&& BMCCCR && with condensed ring &&
−
&& BMMCPL && with Pyrrolidine && 0
+
&& BMCCBR && with bridged structure &&
−
&& BMMCLA && with lacton && 17
+
−
&& BMMCAC && alicyclic molecules && 53
+
−
&& BMMCACCH && cyclohexan && 28
+
−
&& BMMCACEN && cyclohexen && 9
+
−
&& BMMCACDE && cyclohexadien && 11
+
−
&& BMMCACxx && others && 5
+
−
&& BMMCHE && hetero aromatic molecules && 47
+
−
&& BMMCAS && assembled && 45
+
−
&& '''BMCC''' && '''conjugated cyclic molecules''' && 441
+
−
&& BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) && 232
+
−
&& BMCCPUCA && with CoA && 119
+
−
&& BMCCPUAD && with Adenine && 60
+
−
&& BMCCPUGU && with Guanine && 29
+
−
&& BMCCPUIN && with Inosine && 12
+
−
&& BMCCPUXX && others(Xanthine) && 12
+
−
&& BMCCPT && with pteridine ring (pterin, flavine ...)  && 44
+
−
&& BMCCPTFL && with Flavin && 7
+
−
&& BMCCPTFO && with Folic acid && 16
+
−
&& BMCCPTPD && with Pteridine && 5
+
−
&& BMCCPTPT && with Pterine && 15
+
−
&& BMCCPP && with porphyrin ring (V12, cobalamine, heme) && 46
+
−
&& BMCCVE && with tocopherol ring (vitamin E)  && 2
+
−
&& BMCCID && with indole ring && 37
+
−
&& BMCCQL && with quinoline && 14
+
−
&& BMCCNP && with Naphthalen && 13
+
−
&& BMCCCR && with condensed ring && 37
+
−
&& BMCCBR && with bridged structure && 16
+
 
}}
 
}}
  
−
Last Classification
+
functional group list
−
*carboxyl
+
*CA carboxylic acid
−
*aldehydo
+
*DA dicarboxylic acid
−
*acetyl, oxalo
+
*SA semialdehyde
−
*hydroxy, oxo
+
*AL aldehyde
−
*amino, amide, nitro
+
*HO hydroxy
−
*alkyl
+
*OX oxo
−
*CoA
+
*AM amide
−
*phosphate
+
*AN amine
−
*sulfur
+
*CN cyano, nitrile, nitro
−
*halogen(F,Cl,Br,I)
+
*PH phosphate
−
*metal
+
*SF sulfur
 +
*KT ketone
 +
*CE CoA
 +
*UM unmodified
 +
*HL halogens
 +
*MT metals
 +
*ME methyl
 +
*AK alkyl (-CH2-X)  
 +
*ES ester
 +
*AM amide
 +
*AN amine
 +
*PH phosphate
 +
*SF sulfur
 +
*CP complexed
 +
*CO carbonyl

Latest revision as of 18:24, 30 April 2008

[edit] Category description

This page introduces a hierarchical classification of basic metabolites.
Class Description

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ID Description Note


Basic metabolites ID list

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ID Description Note

functional group list

  • CA carboxylic acid
  • DA dicarboxylic acid
  • SA semialdehyde
  • AL aldehyde
  • HO hydroxy
  • OX oxo
  • AM amide
  • AN amine
  • CN cyano, nitrile, nitro
  • PH phosphate
  • SF sulfur
  • KT ketone
  • CE CoA
  • UM unmodified
  • HL halogens
  • MT metals
  • ME methyl
  • AK alkyl (-CH2-X)
  • ES ester
  • AM amide
  • AN amine
  • PH phosphate
  • SF sulfur
  • CP complexed
  • CO carbonyl
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