BM All

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==Category description==
 
==Category description==
 
This page introduces a hierarchical classification of basic metabolites.
 
This page introduces a hierarchical classification of basic metabolites.
 +
<br>
 +
Class Description
 +
{{ClassifiedTable|1=
 +
  BMIO && Inorganic Chemcals && Metals, Halogens, Nitrogen, Sulfur, Phosphorus compounds
 +
&& BMAA && Amino acids && Basic amino acids(composing protein), their modified form(excluding carbon chain modification) and their isomeric form
 +
&& BMAD && Amino acids derivatives && Amino acids(excluding basic a.a.), Basic a.a. with additional carbon chain and Peptides
 +
&& BMFY && Fatty Acyl and Related Molecules && Carboxylic acid, Aldehyde, Alcohol, Amine, Phosphate, Sulfate and so on
 +
&& BMMC && mono-cyclic or asssembled cyclic molecules && benzene, pyrimidine, pyridine, imidazole, thiazole, quinone, retinol, pyrrolidin, lacton, aliphatic cyclic, hetero cyclic, asembled
 +
&& BMCC && conjugated cyclic molecules && purine, pteridine, porphyrin, indole, tocopherol, quinoline, naphthalen, condensed ring, bridged structure
 +
&& BMxx && others && other metabolite related molecules
 +
}}
 +
  
 +
Basic metabolites ID list
 
{{ClassifiedTable|1=
 
{{ClassifiedTable|1=
−
&& BM && basic metabolites (including organic acids, ketones, alcohols, hydrocarbons, and DNA bases) &&
+
BMIO && BMIOOX && oxidized elements &&&& BMIOMT && metals and halogens (and other atomic elements) &&  
−
&& BMIO && inorganics &&
+
    && BMIONT && nitrogen compounds &&  
−
&& BMIOOX && oxidized elements &&
+
    && BMIOPP && phosphates &&  
−
&& BMIOMT && metals and halogens (and other atomic elements) &&
+
    && BMIOSF && sulfates &&  
−
&& BMIONT && nitrogen compounds &&
+
BMAA && BMAASn && straight-chain amino acids(with carbon chain length:n) &&
−
&& BMIOPP && phosphates &&
+
    && BMAABn && branched-chain amino acids(with carbon chain length:n)  &&
−
&& BMIOSF && sulfates &&
+
    && BMAACC && cyclic and aromatic amino acids &&
−
&& BMAA && amino acids   &&
+
    && BMAACCBZ && cyclic and aromatic amino acids with benzene ring &&
−
&& BMAAST && straight-chain amino acids &&
+
    && BMAACCID && cyclic and aromatic amino acids with indole ring &&
−
&& BMAABT && branched-chain amino acids &&
+
    && BMAACCPL && cyclic and aromatic amino acids with pyrrolidine ring &&
−
&& BMAACA && cyclic and aromatic amino acids &&
+
    && BMAACCIZ && cyclic and aromatic amino acids with imidazole ring &&
−
&& BMAD && amino acid derivatives including peptides &&
+
BMAD && BMADSn && straight-chain amino acid derivatives(with carbon chain length:n) &&
−
&& && &&
+
    && BMADBn && branched-chain a.a. derivatives(with carbon chain length:n) &&
−
&& BMSC && straight-chain molecules &&
+
    && BMADCC && cyclic and aromatic a.a. derivatives &&
−
&& BMSC02 && with carbon chain length 2 && 17
+
    && BMADCCBZ && a.a. derivatives with benzene ring &&
−
&& BMSC03 && with carbon chain length 3 && 43
+
    && BMADCD && a.a. derivatives with indole ring &&
−
&& BMSC04 && with carbon chain length 4 && 34
+
    && BMADCZ && a.a. derivatives with imidazole ring &&
−
&& BMSC05 && with carbon chain length 5 && 23
+
    && BMADCX && a.a. derivatives with other cyclic molecules &&
−
&& BMSC06 && with carbon chain length 6 && 23
+
    && BMADDP && dipeptide &&
−
&& BMSC07 && with carbon chain length 7 && 17
+
    && BMADTP && tripeptide &&
−
&& BMSC08 && with carbon chain length over 8 && 6
+
BMFY && BMFYSn && straight-chain molecules(with carbon chain length:n) &&
−
&& BMBC && branched-chain molecules &&
+
    && BMFYBn && branched-chain molecules(with carbon chain length:n) &&
−
&& && &&
+
BMxx && other metabolite related molecules &&
−
&& BMMC && mono-cyclic or cyclic assembled molecules && 620
+
    && BMxxSx && CO2, CH4 and so on &&
−
&& BMMCBZ && with benzene ring  && 228
+
    && BMxxBx && Trimethyl-amine, Isobutyro-nitrile and so on &&
−
&& BMMCBZ && with benzene ring (Substitution = 0,1,2o,2m,2p,3,4,5,6) && 1,46,(33,12,59),58,11,1,1
+
BMMC && mono-cyclic or cyclic assembled molecules &&
−
&& BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) && 38
+
    && BMMCBZ && with benzene ring  &&
−
&& BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) && 120
+
    && BMMCBZ && with benzene ring (Substituent = 0-1,2o,2m,2p,3,4-6) &&
−
&& BMMCPYCT && with Cytosine && 32
+
    && BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) &&
−
&& BMMCPYTY && with Thymine && 20
+
    && BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) &&
−
&& BMMCPYUR && with Uracil && 51
+
    && BMMCPYCT && with Cytosine &&
−
&& BMMCPYXX && Others && 17
+
    && BMMCPYTY && with Thymine &&
−
&& BMMCIZ && with imidazole ring  && 34
+
    && BMMCPYUR && with Uracil &&
−
&& BMMCTZ && with thiazole ring (thiamine) && 13
+
    && BMMCPYXX && Others &&
−
&& BMMCVA && with retinol ring (vitamin A)  && 4
+
    && BMMCIZ && with imidazole ring  &&
−
&& BMMCQN && with Quinone && 26
+
    && BMMCTZ && with thiazole ring (thiamine) &&
−
&& BMMCHE && hetero aromatic molecules && 47
+
    && BMMCVA && with retinol ring (vitamin A)  &&
−
&& BMMCAC && alicyclic molecules && 48
+
    && BMMCQN && with Quinone &&
−
&& BMMCAS && assembled && 45
+
    && BMMCPL && with Pyrrolidine &&
−
&& BMMCLA && with lacton && 15
+
    && BMMCLA && with lacton &&
−
&& BMMCXX && with lacton && 2
+
    && BMMCAC && alicyclic molecules &&
−
&& && &&
+
    && BMMCACCH && cyclohexan &&
−
&& BMCC && conjugated cyclic molecules && 431
+
    && BMMCACEN && cyclohexen &&
−
&& BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) && 231
+
    && BMMCACDE && cyclohexadien &&
−
&& BMCCPUCA && with CoA && 119
+
    && BMMCACxx && others &&
−
&& BMCCPUAD && with Adenine && 59
+
    && BMMCHE && hetero aromatic molecules &&
−
&& BMCCPUGU && with Guanine && 29
+
    && BMMCAS && assembled &&
−
&& BMCCPUIN && with Inosine && 12
+
BMCC && conjugated cyclic molecules &&
−
&& BMCCPUXA && with Xanthine && 7
+
    && BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) &&
−
&& BMCCPUXX && others && 5
+
    && BMCCPUCA && with CoA &&
−
&& BMCCPT && with pteridine ring (pterin, flavine ...)  && 44
+
    && BMCCPUAD && with Adenine &&
−
&& BMCCPTFL && with Flavin && 7
+
    && BMCCPUGU && with Guanine &&
−
&& BMCCPTFO && with Folic acid && 16
+
    && BMCCPUIN && with Inosine &&
−
&& BMCCPTPD && with Pteridine && 5
+
    && BMCCPUXX && others(Xanthine) &&
−
&& BMCCPTPT && with Pterine && 16
+
    && BMCCPT && with pteridine ring (pterin, flavine ...)  &&
−
&& BMCCPP && with porphyrin ring (V12, cobalamine, heme) && 45
+
    && BMCCPTFL && with Flavin &&
−
&& BMCCVE && with tocopherol ring (vitamin E)  && 2
+
    && BMCCPTFO && with Folic acid &&
−
&& BMCCID && with indole ring && 37
+
    && BMCCPTPD && with Pteridine &&
−
&& BMCCQL && with quinoline && 13
+
    && BMCCPTPT && with Pterine &&
−
&& BMCCNP && with Naphthalen && 13
+
    && BMCCPP && with porphyrin ring (V12, cobalamine, heme) &&
−
&& BMCCCR && with condensed ring && 33
+
    && BMCCVE && with tocopherol ring (vitamin E)  &&
−
&& BMCCBR && with bridged structure && 13
+
    && BMCCID && with indole ring &&
 +
    && BMCCQL && with quinoline &&
 +
    && BMCCNP && with Naphthalen &&
 +
&& BMCCCR && with condensed ring &&
 +
&& BMCCBR && with bridged structure &&
 
}}
 
}}
  
−
Last Classification
+
functional group list
−
*phosphate
+
*CA carboxylic acid
−
*di- or triphosphate
+
*DA dicarboxylic acid
−
*with sugars
+
*SA semialdehyde
−
*with amino acids
+
*AL aldehyde
−
*with alkyl chains
+
*HO hydroxy
−
*with halogens (F, Cl, Br etc)
+
*OX oxo
−
*with metals (Se, Te, Co etc)
+
*AM amide
−
*with sulfur
+
*AN amine
−
*with nitrogen
+
*CN cyano, nitrile, nitro
−
*with adenine
+
*PH phosphate
 +
*SF sulfur
 +
*KT ketone
 +
*CE CoA
 +
*UM unmodified
 +
*HL halogens
 +
*MT metals
 +
*ME methyl
 +
*AK alkyl (-CH2-X)  
 +
*ES ester
 +
*AM amide
 +
*AN amine
 +
*PH phosphate
 +
*SF sulfur  
 +
*CP complexed
 +
*CO carbonyl

Latest revision as of 18:24, 30 April 2008

[edit] Category description

This page introduces a hierarchical classification of basic metabolites.
Class Description

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ID Description Note


Basic metabolites ID list

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ID Description Note

functional group list

  • CA carboxylic acid
  • DA dicarboxylic acid
  • SA semialdehyde
  • AL aldehyde
  • HO hydroxy
  • OX oxo
  • AM amide
  • AN amine
  • CN cyano, nitrile, nitro
  • PH phosphate
  • SF sulfur
  • KT ketone
  • CE CoA
  • UM unmodified
  • HL halogens
  • MT metals
  • ME methyl
  • AK alkyl (-CH2-X)
  • ES ester
  • AM amide
  • AN amine
  • PH phosphate
  • SF sulfur
  • CP complexed
  • CO carbonyl
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