BM All

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==Category description==
 
==Category description==
 
This page introduces a hierarchical classification of basic metabolites.
 
This page introduces a hierarchical classification of basic metabolites.
 +
<br>
 +
Class Description
 +
{{ClassifiedTable|1=
 +
  BMIO && Inorganic Chemcals && Metals, Halogens, Nitrogen, Sulfur, Phosphorus compounds
 +
&& BMAA && Amino acids && Basic amino acids(composing protein), their modified form(excluding carbon chain modification) and their isomeric form
 +
&& BMAD && Amino acids derivatives && Amino acids(excluding basic a.a.), Basic a.a. with additional carbon chain and Peptides
 +
&& BMFY && Fatty Acyl and Related Molecules && Carboxylic acid, Aldehyde, Alcohol, Amine, Phosphate, Sulfate and so on
 +
&& BMMC && mono-cyclic or asssembled cyclic molecules && benzene, pyrimidine, pyridine, imidazole, thiazole, quinone, retinol, pyrrolidin, lacton, aliphatic cyclic, hetero cyclic, asembled
 +
&& BMCC && conjugated cyclic molecules && purine, pteridine, porphyrin, indole, tocopherol, quinoline, naphthalen, condensed ring, bridged structure
 +
&& BMxx && others && other metabolite related molecules
 +
}}
  
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{| class="wikitable" border="1" cellpadding="2" cellspacing="1" style="font-size: smaller; float: center; clear: none; margin: 1em 1em 1em 1em"
 
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|-
 
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! ID
 
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! Description
 
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! Note
 
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|-
 
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{{#repeat: PreTableRow3|1|
 
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<!---START OF ABBREV & TITLE & URL --->
 
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&& BM && basic metabolites (including organic acids, ketones, alcohols, hydrocarbons, and DNA bases) &&
 
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&& BMIO && inorganics &&
 
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&& BMIOOX && oxidized elements &&
 
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&& BMIOMT && metals and halogens (and other atomic elements) &&
 
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&& BMIONT && nitrogen compounds &&
 
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&& BMIOPP && phosphates &&
 
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&& BMIOSF && sulfates &&
 
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&& BMAA && amino acids  &&
 
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&& BMAAST && straight-chain amino acids &&
 
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&& BMAABT && branched-chain amino acids  &&
 
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&& BMAACA && cyclic and aromatic amino acids &&
 
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&& BMAD && amino acid derivatives including peptides &&
 
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&& && &&
 
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&& BMSC && straight-chain molecules &&
 
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&& BMSC02 && with carbon chain length 2 && 17
 
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&& BMSC03 && with carbon chain length 3&& 43
 
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&& BMSC04 && with carbon chain length 4 && 34
 
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&& BMSC05 && with carbon chain length 5 && 23
 
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&& BMSC06 && with carbon chain length 6 && 23
 
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&& BMSC07 && with carbon chain length 7 && 17
 
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&& BMSC08 && with carbon chain length over 8 && 6
 
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&& BMBC && branched-chain molecules &&
 
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&& && &&
 
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&& BMMC && mono-cyclic or cyclic assembled molecules && 617
 
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&& BMMCBZ && with benzene ring  && 226
 
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&& BMMCBZ && with benzene ring (Substitution=0,1,2o,2m,2p,3,4,5,6) && 1,46,(33,12,59),58,11,1,1
 
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&& BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) && 38
 
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&& BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) && 120
 
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&& BMMCPYCT && with Cytosine && 32
 
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&& BMMCPYTY && with Thymine && 20
 
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&& BMMCPYUR && with Uracil && 51
 
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&& BMMCPYXX && Others && 17
 
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&& BMMCIZ && with imidazole ring  && 34
 
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&& BMMCTZ && with thiazole ring (thiamine) && 13
 
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&& BMMCVA && with retinol ring (vitamin A)  && 4
 
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&& BMMCQN && with Quinone && 26
 
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&& BMMCHE && hetero aromatic molecules && 45
 
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&& BMMCAC && alicyclic molecules && 48
 
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&& BMMCAS && assembled && 38
 
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&& BMMCLA && with lacton && 10
 
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&& && &&
 
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&& BMCC && conjugated cyclic molecules && 428
 
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&& BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) && 229
 
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&& BMCCPUCA && with CoA && 119
 
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&& BMCCPUAD && with Adenine && 57
 
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&& BMCCPUGU && with Guanine && 29
 
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&& BMCCPUIN && with Inosine && 12
 
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&& BMCCPUXA && with Xanthine && 7
 
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&& BMCCPUXX && others && 5
 
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&& BMCCPT && with pteridine ring (pterin, flavine ...)  && 43
 
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&& BMCCPTFL && with Flavin && 7
 
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&& BMCCPTFO && with Folic acid && 16
 
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&& BMCCPTPD && with Pteridine && 4
 
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&& BMCCPTPT && with Pterine && 16
 
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&& BMCCPP && with porphyrin ring (V12, cobalamine, heme) && 45
 
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&& BMCCVE && with tocopherol ring (vitamin E)  && 2
 
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&& BMCCID && with indole ring && 37
 
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&& BMCCQL && with quinoline && 14
 
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&& BMCCNP && with Naphthalen && 13
 
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&& BMCCCR && with condensed ring && 30
 
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&& BMCCBR && with bridged structure && 12
 
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<!---END OF ID & DESCRIPTION & NOTE --->
 
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|\n|1=}}
 
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|}
 
  
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Last Classification
+
Basic metabolites ID list
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*phosphate
+
{{ClassifiedTable|1=
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*di- or triphosphate
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BMIO && BMIOOX && oxidized elements &&&& BMIOMT && metals and halogens (and other atomic elements) &&
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*with sugars
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    && BMIONT && nitrogen compounds &&
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*with amino acids
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    && BMIOPP && phosphates &&
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*with alkyl chains
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    && BMIOSF && sulfates &&
−
*with halogens (F, Cl, Br etc)
+
BMAA && BMAASn && straight-chain amino acids(with carbon chain length:n) &&
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*with metals (Se, Te, Co etc)
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    && BMAABn && branched-chain amino acids(with carbon chain length:n)  &&
−
*with sulfur
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    && BMAACC && cyclic and aromatic amino acids &&
−
*with nitrogen
+
    && BMAACCBZ && cyclic and aromatic amino acids with benzene ring &&
−
*with adenine
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    && BMAACCID && cyclic and aromatic amino acids with indole ring &&
 +
    && BMAACCPL && cyclic and aromatic amino acids with pyrrolidine ring &&
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    && BMAACCIZ && cyclic and aromatic amino acids with imidazole ring &&
 +
BMAD && BMADSn && straight-chain amino acid derivatives(with carbon chain length:n) &&
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    && BMADBn && branched-chain a.a. derivatives(with carbon chain length:n) &&
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    && BMADCC && cyclic and aromatic a.a. derivatives &&
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    && BMADCCBZ && a.a. derivatives with benzene ring &&
 +
    && BMADCD && a.a. derivatives with indole ring &&
 +
    && BMADCZ && a.a. derivatives with imidazole ring &&
 +
    && BMADCX && a.a. derivatives with other cyclic molecules &&
 +
    && BMADDP && dipeptide &&
 +
    && BMADTP && tripeptide &&
 +
BMFY && BMFYSn && straight-chain molecules(with carbon chain length:n) &&
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    && BMFYBn && branched-chain molecules(with carbon chain length:n) &&
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BMxx && other metabolite related molecules &&
 +
    && BMxxSx && CO2, CH4 and so on &&
 +
    && BMxxBx && Trimethyl-amine, Isobutyro-nitrile and so on &&
 +
BMMC && mono-cyclic or cyclic assembled molecules &&
 +
    && BMMCBZ && with benzene ring  &&
 +
    && BMMCBZ && with benzene ring (Substituent = 0-1,2o,2m,2p,3,4-6) &&
 +
    && BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) &&
 +
    && BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) &&
 +
    && BMMCPYCT && with Cytosine &&
 +
    && BMMCPYTY && with Thymine &&
 +
    && BMMCPYUR && with Uracil &&
 +
    && BMMCPYXX && Others &&
 +
    && BMMCIZ && with imidazole ring  &&
 +
    && BMMCTZ && with thiazole ring (thiamine) &&
 +
    && BMMCVA && with retinol ring (vitamin A)  &&
 +
    && BMMCQN && with Quinone &&
 +
    && BMMCPL && with Pyrrolidine &&
 +
    && BMMCLA && with lacton &&
 +
    && BMMCAC && alicyclic molecules &&
 +
    && BMMCACCH && cyclohexan &&
 +
    && BMMCACEN && cyclohexen &&
 +
    && BMMCACDE && cyclohexadien &&
 +
    && BMMCACxx && others &&
 +
    && BMMCHE && hetero aromatic molecules &&
 +
    && BMMCAS && assembled &&
 +
BMCC && conjugated cyclic molecules &&
 +
    && BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) &&
 +
    && BMCCPUCA && with CoA &&
 +
    && BMCCPUAD && with Adenine &&
 +
    && BMCCPUGU && with Guanine &&
 +
    && BMCCPUIN && with Inosine &&
 +
    && BMCCPUXX && others(Xanthine) &&
 +
    && BMCCPT && with pteridine ring (pterin, flavine ...)  &&
 +
    && BMCCPTFL && with Flavin &&
 +
    && BMCCPTFO && with Folic acid &&
 +
    && BMCCPTPD && with Pteridine &&
 +
    && BMCCPTPT && with Pterine &&
 +
    && BMCCPP && with porphyrin ring (V12, cobalamine, heme) &&
 +
    && BMCCVE && with tocopherol ring (vitamin E)  &&
 +
    && BMCCID && with indole ring &&
 +
    && BMCCQL && with quinoline &&
 +
    && BMCCNP && with Naphthalen &&
 +
&& BMCCCR && with condensed ring &&
 +
&& BMCCBR && with bridged structure &&
 +
}}
 +
 
 +
functional group list
 +
*CA carboxylic acid
 +
*DA dicarboxylic acid
 +
*SA semialdehyde
 +
*AL aldehyde
 +
*HO hydroxy
 +
*OX oxo
 +
*AM amide
 +
*AN amine
 +
*CN cyano, nitrile, nitro
 +
*PH phosphate
 +
*SF sulfur  
 +
*KT ketone
 +
*CE CoA
 +
*UM unmodified
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*HL halogens
 +
*MT metals
 +
*ME methyl
 +
*AK alkyl (-CH2-X)
 +
*ES ester
 +
*AM amide
 +
*AN amine
 +
*PH phosphate
 +
*SF sulfur
 +
*CP complexed
 +
*CO carbonyl

Latest revision as of 18:24, 30 April 2008

[edit] Category description

This page introduces a hierarchical classification of basic metabolites.
Class Description

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ID Description Note


Basic metabolites ID list

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ID Description Note

functional group list

  • CA carboxylic acid
  • DA dicarboxylic acid
  • SA semialdehyde
  • AL aldehyde
  • HO hydroxy
  • OX oxo
  • AM amide
  • AN amine
  • CN cyano, nitrile, nitro
  • PH phosphate
  • SF sulfur
  • KT ketone
  • CE CoA
  • UM unmodified
  • HL halogens
  • MT metals
  • ME methyl
  • AK alkyl (-CH2-X)
  • ES ester
  • AM amide
  • AN amine
  • PH phosphate
  • SF sulfur
  • CP complexed
  • CO carbonyl
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