PKS:AN8412

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(update information: gene cluster, reference, gene name and product.)
 
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|species=Aspergillus nidulans FGSC A4
 
|species=Aspergillus nidulans FGSC A4
 
|taxonomy=Eukaryota; Fungi; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella
 
|taxonomy=Eukaryota; Fungi; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella
−
|product=
+
|product=Aspyridone
 
|GenBank=EAA67034
 
|GenBank=EAA67034
 
|UniProt=Q5ATG8
 
|UniProt=Q5ATG8
−
|UniRef90=C8VEB3
+
|UniRef90=Q5ATG8
−
|UniRef50=C8VEB3
+
|UniRef50=Q5ATG8
−
|geneName=
+
|geneName=apdA
 
|MAPSI=KS-AT-DH-KR-ACP
 
|MAPSI=KS-AT-DH-KR-ACP
 
|CDD=KS-AT-DH-ME-KR-PP-Con-EntF-PP-KR
 
|CDD=KS-AT-DH-ME-KR-PP-Con-EntF-PP-KR
−
|class=PRPKS
+
|class=PKS-NRPS
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|reliability=putative
+
|reliability= Uncharacterized
 
|description=hypothetical protein AN8412.2 [Aspergillus nidulans FGSC A4]
 
|description=hypothetical protein AN8412.2 [Aspergillus nidulans FGSC A4]
−
|information=
+
|information=Identical with CBF80487.1 and XP_681681. Gene cluster: 8 genes.
 
|length=3930
 
|length=3930
−
|references=\*Castoe.+2007$
+
|references=\*Castoe.+2007$~\*Wortman.+2009$~\*Andersen.+2013$
 
}}
 
}}
 
{{{{NAMESPACE}}/Footer}}
 
{{{{NAMESPACE}}/Footer}}

Latest revision as of 17:46, 26 March 2013

Polyketide Top Species List UniRef90 Class UniRef50 Class Gene Class Domains
(by CDD) 		Domains
(by MAPSI)
Aspergillus nidulans FGSC A4 (GenBank EAA67034) all species
Class PKS-NRPS (length: 3930) all classes   Class in KS domain phylogeny Reliability Uncharacterized
Product Aspyridone GeneName apdA
UniProt,UniRef90 Q5ATG8 , Q5ATG8 UniRef50 Q5ATG8
Domain by MAPSI KS-AT-DH-KR-ACP

(notation help / all patterns)

Domain by CDD KS-AT-DH-ME-KR-PP-Con-EntF-PP-KR

(notation help / all patterns)

Domain by ITER-DB {{{ITERDB}}}

(notation help / all patterns)

Estimated Domain
Description hypothetical protein AN8412.2 [Aspergillus nidulans FGSC A4]
Information Identical with CBF80487.1 and XP_681681. Gene cluster: 8 genes.
References
  • Andersen M R, Nielsen J B, Klitgaard A, Petersen L M, Zachariasen M, Hansen T J, Blicher L H, Gotfredsen C H, Larsen T O, Nielsen K F, Mortensen U H: Accurate prediction of secondary metabolite gene clusters in filamentous fungi. Proc Natl Acad Sci U S A 110(1): E99-107. 2013
  • Castoe TA, Stephens T, Noonan BP, Calestani C: A novel group of type I polyketide synthases (PKS) in animals and the complex phylogenomics of PKSs. Gene 392:47-58, 2007
  • Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P, von Dohren H, Doonan J, Driessen AJ, Durek P, Espeso E, Fekete E, Flipphi M, Estrada CG, Geysens S, Goldman G, de Groot PW, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L, Karanyi Z, Kato M, Keller N, Kelly DE, Kiel JA, Kim JM, van der Klei IJ, Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, Maccabe A, Meyer V, Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR, Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, Pocsi I, Punt PJ, Ram AF, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H, van de Vondervoort PJ, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP, Brandt BW, Cornell MJ, van den Hondel CA, Visser J, Oliver SG, Turner G: The 2008 update of the aspergillus nidulans genome annotation: A community effort. Fungal Genet Biol 46 Suppl 1S2-13, 2009
Link AspGD

This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)

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