BM All

Latest revision as of 18:24, 30 April 2008

[edit] Category description

This page introduces a hierarchical classification of basic metabolites.
Class Description

Template:TableRow3 Template:TableRow3 Template:TableRow3 Template:TableRow3 Template:TableRow3 Template:TableRow3 Template:TableRow3

ID	Description	Note

Basic metabolites ID list

ID	Description	Note

functional group list

CA carboxylic acid
DA dicarboxylic acid
SA semialdehyde
AL aldehyde
HO hydroxy
OX oxo
AM amide
AN amine
CN cyano, nitrile, nitro
PH phosphate
SF sulfur
KT ketone
CE CoA
UM unmodified
HL halogens
MT metals
ME methyl
AK alkyl (-CH2-X)
ES ester
AM amide
AN amine
PH phosphate
SF sulfur
CP complexed
CO carbonyl

@@ Line 1: / Line 1: @@
 ==Category description==
-This page introduces a hierarchical classification of flavonoid structures.
+This page introduces a hierarchical classification of basic metabolites.
+<br>
+Class Description
+{{ClassifiedTable|1=
+   BMIO && Inorganic Chemcals && Metals, Halogens, Nitrogen, Sulfur, Phosphorus compounds
+&& BMAA && Amino acids && Basic amino acids(composing protein), their modified form(excluding carbon chain modification) and their isomeric form
+&& BMAD && Amino acids derivatives && Amino acids(excluding basic a.a.), Basic a.a. with additional carbon chain and Peptides
+&& BMFY && Fatty Acyl and Related Molecules && Carboxylic acid, Aldehyde, Alcohol, Amine, Phosphate, Sulfate and so on
+&& BMMC && mono-cyclic or asssembled cyclic molecules && benzene, pyrimidine, pyridine, imidazole, thiazole, quinone, retinol, pyrrolidin, lacton, aliphatic cyclic, hetero cyclic, asembled
+&& BMCC && conjugated cyclic molecules && purine, pteridine, porphyrin, indole, tocopherol, quinoline, naphthalen, condensed ring, bridged structure
+&& BMxx && others && other metabolite related molecules
+}}
-{| class="wikitable" border="1" cellpadding="2" cellspacing="1" style="font-size: smaller; float: center; clear: none; margin: 1em 1em 1em 1em"
-|-
+Basic metabolites ID list
-! ID
+{{ClassifiedTable|1=
-! Description
+BMIO && BMIOOX && oxidized elements &&&& BMIOMT && metals and halogens (and other atomic elements) &&
-! Note
+     && BMIONT && nitrogen compounds &&
-|-
+     && BMIOPP && phosphates &&
-{{#repeat: PreTableRow3|1|
+     && BMIOSF && sulfates &&
-<!---START OF ABBREV & TITLE & URL --->
+BMAA && BMAASn && straight-chain amino acids(with carbon chain length:n) &&
-&& IO && (inorganics) &&
+     && BMAABn && branched-chain amino acids(with carbon chain length:n)  &&
-&& IOOX && oxidized elements (CO2, NH3, and so on) &&
+     && BMAACC && cyclic and aromatic amino acids &&
-&& IOMT && metals and halogens (and other atomic elements) &&
+     && BMAACCBZ && cyclic and aromatic amino acids with benzene ring &&
-&& BM && (basic metabolites including organic acids, ketones, alcohols, hydrocarbons, and DNA bases) &&
+     && BMAACCID && cyclic and aromatic amino acids with indole ring &&
-&& BMAA && amino acids   &&
+     && BMAACCPL && cyclic and aromatic amino acids with pyrrolidine ring &&
-&& BMAAST && straight-chain amino acids &&
+     && BMAACCIZ && cyclic and aromatic amino acids with imidazole ring &&
-&& BMAABT && branched-chain amino acids  &&
+BMAD && BMADSn && straight-chain amino acid derivatives(with carbon chain length:n) &&
-&& BMAACA && cyclic and aromatic amino acids &&
+     && BMADBn && branched-chain a.a. derivatives(with carbon chain length:n) &&
-&& BMAD && amino acid derivatives including peptides &&
+     && BMADCC && cyclic and aromatic a.a. derivatives &&
-&& BMSC && straight-chain molecules &&
+     && BMADCCBZ && a.a. derivatives with benzene ring &&
-&& BMBC && branched-chain molecules &&
+     && BMADCD && a.a. derivatives with indole ring &&
-&& BMBC01 && with one branch &&
+     && BMADCZ && a.a. derivatives with imidazole ring &&
-&& BMBC02 && with two branch &&
+     && BMADCX && a.a. derivatives with other cyclic molecules &&
-&& BMBC03 && with three branch &&
+     && BMADDP && dipeptide &&
-&& BMMC && mono-cyclic or cyclic assembled molecules &&
+     && BMADTP && tripeptide &&
-&& BMMCBZ && with benzene ring  &&
+BMFY && BMFYSn && straight-chain molecules(with carbon chain length:n) &&
-&& BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) &&
+     && BMFYBn && branched-chain molecules(with carbon chain length:n) &&
-&& BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) &&
+BMxx && other metabolite related molecules &&
-&& BMMCIZ && with imidazole ring  &&
+     && BMxxSx && CO2, CH4 and so on &&
-&& BMMCTZ && with thiazole ring (thiamine->BMMCPY) &&
+     && BMxxBx && Trimethyl-amine, Isobutyro-nitrile and so on &&
-&& BMMCVA && with retinol ring (vitamin A)  &&
+BMMC && mono-cyclic or cyclic assembled molecules &&
-&& BMMCXX && other ring systems (other ring systems, epoxide, cyclohexane, cyclopentane, hetero aromatic, lacton, assembled, other) &&
+     && BMMCBZ && with benzene ring  &&
-&& BMCC && conjugated cyclic molecules &&
+     && BMMCBZ && with benzene ring (Substituent = 0-1,2o,2m,2p,3,4-6) &&
-&& BMCCID && with indole ring &&
+     && BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) &&
-&& BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) &&
+     && BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) &&
-&& BMCCPT && with pteridine ring (pterin, flavine ...)  &&
+     && BMMCPYCT && with Cytosine &&
-&& BMCCPP && with porphyrin ring (V12, cobalamine, heme) &&
+     && BMMCPYTY && with Thymine &&
-&& BMCCVE && with tocopherol ring (vitamin E)  &&
+     && BMMCPYUR && with Uracil &&
-&& BMCCXX && other ring systems (biotin, naphthalen, bridged, condensed) &&
+     && BMMCPYXX && Others &&
-<!---END OF ID & DESCRIPTION & NOTE --->
+     && BMMCIZ && with imidazole ring  &&
-|\n|1=}}
+     && BMMCTZ && with thiazole ring (thiamine) &&
-|}
+     && BMMCVA && with retinol ring (vitamin A)  &&
+     && BMMCQN && with Quinone &&
+     && BMMCPL && with Pyrrolidine &&
+     && BMMCLA && with lacton &&
+     && BMMCAC && alicyclic molecules &&
+     && BMMCACCH && cyclohexan &&
+     && BMMCACEN && cyclohexen &&
+     && BMMCACDE && cyclohexadien &&
+     && BMMCACxx && others &&
+     && BMMCHE && hetero aromatic molecules &&
+     && BMMCAS && assembled &&
+BMCC && conjugated cyclic molecules &&
+     && BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) &&
+     && BMCCPUCA && with CoA &&
+     && BMCCPUAD && with Adenine &&
+     && BMCCPUGU && with Guanine &&
+     && BMCCPUIN && with Inosine &&
+     && BMCCPUXX && others(Xanthine) &&
+     && BMCCPT && with pteridine ring (pterin, flavine ...)  &&
+     && BMCCPTFL && with Flavin &&
+     && BMCCPTFO && with Folic acid &&
+     && BMCCPTPD && with Pteridine &&
+     && BMCCPTPT && with Pterine &&
+     && BMCCPP && with porphyrin ring (V12, cobalamine, heme) &&
+     && BMCCVE && with tocopherol ring (vitamin E)  &&
+     && BMCCID && with indole ring &&
+     && BMCCQL && with quinoline &&
+     && BMCCNP && with Naphthalen &&
+&& BMCCCR && with condensed ring &&
+&& BMCCBR && with bridged structure &&
+}}
+functional group list
+*CA carboxylic acid
+*DA dicarboxylic acid
+*SA semialdehyde
+*AL aldehyde
+*HO hydroxy
+*OX oxo
+*AM amide
+*AN amine
+*CN cyano, nitrile, nitro
+*PH phosphate
+*SF sulfur
+*KT ketone
+*CE CoA
+*UM unmodified
+*HL halogens
+*MT metals
+*ME methyl
+*AK alkyl (-CH2-X)
+*ES ester
+*AM amide
+*AN amine
+*PH phosphate
+*SF sulfur
+*CP complexed
+*CO carbonyl

BM All

Latest revision as of 18:24, 30 April 2008

[edit] Category description

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