PKS:An02g08290

From Metabolomics.JP
(Difference between revisions)
Jump to: navigation, search
(NRPS-PKS ->PKS-NRPS)
 
(3 intermediate revisions by one user not shown)
Line 11: Line 11:
 
|MAPSI=KS-AT-DH-KR
 
|MAPSI=KS-AT-DH-KR
 
|CDD=KS-AT-DH-(ME)-KR-PP-PRK12467-PP-KR
 
|CDD=KS-AT-DH-(ME)-KR-PP-PRK12467-PP-KR
−
|class=NRPS-PKS
+
|class=PKS-NRPS
 
|reliability=
 
|reliability=
 
|description=hypothetical protein An02g08290 [Aspergillus niger]
 
|description=hypothetical protein An02g08290 [Aspergillus niger]
−
|information=Possible NRPS-PKS domain structure: KS-AT-DH-CAP
+
|information=Similar with (CAK37791). Possible NRPS-PKS domain structure: KS-AT-DH-CAP
 
|length=3907
 
|length=3907
 
|references=\*Pel.+2007$
 
|references=\*Pel.+2007$
 
}}
 
}}
 
{{{{NAMESPACE}}/Footer}}
 
{{{{NAMESPACE}}/Footer}}

Latest revision as of 21:18, 16 December 2012

Polyketide Top Species List UniRef90 Class UniRef50 Class Gene Class Domains
(by CDD) 		Domains
(by MAPSI)
Aspergillus niger CBS 513.88 (GenBank XP_001399961) all species
Class PKS-NRPS (length: 3907) all classes   Class 33.NRPS-PKS_V in KS domain phylogeny Reliability
Product GeneName
UniProt,UniRef90 A2QDU0 , UniRef90_A2QDU0 UniRef50 UniRef50_A2QDU0
Domain by MAPSI KS-AT-DH-KR

(notation help / all patterns)

Domain by CDD KS-AT-DH-(ME)-KR-PP-PRK12467-PP-KR

(notation help / all patterns)

Domain by ITER-DB {{{ITERDB}}}

(notation help / all patterns)

Estimated Domain
Description hypothetical protein An02g08290 [Aspergillus niger]
Information Similar with (CAK37791). Possible NRPS-PKS domain structure: KS-AT-DH-CAP
References
  • Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wosten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H: Genome sequencing and analysis of the versatile cell factory aspergillus niger cbs 513.88. Nat Biotechnol 25(2):221-231, 2007
Link AspGD

This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)

Retrieved from "http://metabolomics.jp/mediawiki/index.php?title=PKS:An02g08290&oldid=304126"
Personal tools
Namespaces

Variants
Actions
Navigation
metabolites
Toolbox