PKS:Bact36
From Metabolomics.JP
(Difference between revisions)
| Line 3: | Line 3: | ||
|species=Saccharopolyspora erythraea NRRL 2338 | |species=Saccharopolyspora erythraea NRRL 2338 | ||
|taxonomy=Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Pseudonocardiaceae; Saccharopolyspora | |taxonomy=Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Pseudonocardiaceae; Saccharopolyspora | ||
| − | |product= | + | |product=Mellein |
|GenBank=YP_001107644 | |GenBank=YP_001107644 | ||
| − | |geneName= | + | |geneName=pks8 |
|MAPSI=KS-AT-DH-KR-ACP | |MAPSI=KS-AT-DH-KR-ACP | ||
|CDD=KS-AT-DH-KR-PP | |CDD=KS-AT-DH-KR-PP | ||
| + | |InferredDomain=KS-AT-TH-KR-ACP | ||
|class=iPKS-6-MSAS | |class=iPKS-6-MSAS | ||
| − | |reliability= | + | |reliability=identified |
|description=iterative type I polyketide synthase [Saccharopolyspora erythraea NRRL 2338] | |description=iterative type I polyketide synthase [Saccharopolyspora erythraea NRRL 2338] | ||
| − | |information= | + | |information=SACE5532 (or pks8) catalyzes the formation of Mellein (3,4-dihydro-8-hydroxy-3-methylisocoumarin, 1). Notably, the KR domain alone is able to recognize and differentiate the polyketide intermediates. |
|length=1738 | |length=1738 | ||
| − | |references=\*Schmitt.+2009$ | + | |references=\*Schmitt.+2009$~\*Oliynyk.+2007$~\*Sun H.+2012$ |
}} | }} | ||
{{{{NAMESPACE}}/Footer}} | {{{{NAMESPACE}}/Footer}} | ||
Latest revision as of 03:02, 14 September 2012
| Polyketide Top | Species List | UniRef90 Class | UniRef50 Class | Gene Class | Domains (by CDD) |
Domains (by MAPSI) |
| Saccharopolyspora erythraea NRRL 2338 (GenBank YP_001107644) all species | |||
|---|---|---|---|
| Class | iPKS-6-MSAS (length: 1738) all classes Class 03b_bMSAS in KS domain phylogeny | Reliability | identified |
| Product | Mellein | GeneName | pks8 |
| UniProt,UniRef90 | [1] , [2] | UniRef50 | [3] |
| Domain by MAPSI | KS-AT-DH-KR-ACP | ||
| Domain by CDD | KS-AT-DH-KR-PP | ||
| Domain by ITER-DB | {{{ITERDB}}} | ||
| Estimated Domain | KS-AT-TH-KR-ACP | ||
| Description | iterative type I polyketide synthase [Saccharopolyspora erythraea NRRL 2338] | ||
| Information | SACE5532 (or pks8) catalyzes the formation of Mellein (3,4-dihydro-8-hydroxy-3-methylisocoumarin, 1). Notably, the KR domain alone is able to recognize and differentiate the polyketide intermediates. | ||
| References |
| ||
| Link | AspGD | ||
This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)
