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Revision as of 08:42, 9 September 2012

This site is developed & maintained by: Arita Laboratory, The University of Tokyo (東大理有田研)　More...

Updates

食品の暫定基準値が 100 Bq/kg に変更されたのにあわせ、放射線情報を改訂しました
生命医薬情報学連合大会の発表募集がはじまりました。
ISCB Asia Call for papers

Events, Job Openings

Bioinformatics & chemo-metrics position at RIKEN Plant Science Center
How to pursue Ph. D. program (and post-doc) at Arita Laboratory (U Tokyo)
Prof position at Nagoya Univ

Flavonoid Database

Flavonoids such as catechin, anthocyanin, flavan are important for our health (6961 data now).

(compilation with NAIST)

Basic Metabolites

Basic metabolites include organic and amino acids, DNAs, and other essential metabolites (1948 data now).

BM top

(not ready. will be organized soon)

Plants

Plants top
Plant orders
Plant families
For each genus (3961 genera now), access

http://metabolomics.jp/wiki/Species:GENUS.

Crude Drug/Kampo

(with NAIST & Toyama Univ.)

Links

Allied DB : KNApSAcK : MassBank : LipidBank

Spectral DB : HMDB : NIST Chemistry WebBook : NIST Library search program : SDBS : SpectroscopyNow : UK Chemical DB Service : Univ Wisconsin BioMagResBank : Univ. Alberta MS library : Univ. Georgia Complex Carbohydrate DB : Univ. Pennsylvania ChemPen Project

Chemical DB : ChemFinder : CTFile format : Daylight Documentation : Merck online catalog : NCI database : PubChem : ZINC

Pathway DB : BioCarta : Biochemical Pathways : BioCyc : KEGG : Univ. Minnesota BBD : KaPPA-View : MapMan : TAIR

Natural Compound DB : AU techno-service Co. : Encyclopaedia of Plant Metabolites : Pherobase

Genome DB : MBGD: Microbial Genome Database : Genobase : Sol genomics network

@@ Line 1: / Line 1: @@
-'''MediaWiki has been successfully installed.'''
+__NOTOC__
+{{#def:LANG|{{#getenv:LANG}}}}
+<small>
+This site is developed & maintained by: [[User:Aritalab|Arita Laboratory, The University of Tokyo]] (東大 理 有田研)　[[Help:Contents|More...]]
+</small>
-Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
+{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
-== Getting started ==
+| style="width:45%;vertical-align:top;padding-left:0.2em" |
-* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
+===<span style="border-bottom:3px solid #aa0">{{Bilingual|最新情報|Updates}}</span>===
-* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
+{|
-* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
+|
+* 食品の暫定基準値が 100 Bq/kg に変更されたのにあわせ、[[Doc:Radiation|放射線情報]]を改訂しました
+* [http://cbi-society.org/cbi/taikai/taikai12/ 生命医薬情報学連合大会]の発表募集がはじまりました。
+* [http://archive.genomeconference.org/File/Mp4/ISCB-Asia-2012/ISCB-Asia-2012.html ISCB Asia] Call for papers
+|
+|}
+| style="width:45%;vertical-align:top;padding-left:0.2em" |
+===<span style="border-bottom:3px solid #0ac">{{Bilingual|イベント、公募|Events, Job Openings}}</span>===
+{| style="border-style:none;border-collapse:collapse"
+|
+* {{Bilingual
+|[http://www.riken.jp/r-world/info/recruit/k110208_s_psc.html バイオインフォ＆計量化学の研究員募集] 理研植物科学研究センター
+|[http://www.riken.jp/engn/r-world/info/recruit/k110208_s_psc.html Bioinformatics & chemo-metrics position] at RIKEN Plant Science Center }}
+* {{Bilingual
+|[[User:Aritalab/PhD|有田研で学びたい方へ]]
+|[[User:Aritalab/PhD|How to pursue Ph. D. program (and post-doc)]] at Arita Laboratory (U Tokyo) }}
+* {{Bilingual
+| 名古屋大で生命理学[http://www.bio.nagoya-u.ac.jp/index2.html 教授職]公募。
+| [http://www.bio.nagoya-u.ac.jp/index2.html Prof position] at Nagoya Univ}}
+|}
+|-
+|style="width:45%;vertical-align:top;padding-left:0.2em" |
+===<span style="border-bottom:3px solid #060">{{Bilingual|フラボノイド データベース|Flavonoid Database}}</span>===
+{| style="border-style:none;border-collapse:collapse"
+|-
+| style="vartical-align:top" |
+| [[Image:Leaf.jpg]]
+| style="vartical-align:top" |
+Flavonoids such as catechin, anthocyanin, flavan are important for our health ({{#countTitle:FL|}} data now).
+* [[:Category:FL|{{bilingual|トップ|Flavonoid top}}]]
+* [[Index:FL    |{{bilingual|索引|Index by name/weight/formula}}]]
+* [[Index:Journal_Titles|{{bilingual|ジャーナル|Journals reporting flavonoid}}]]
+(compilation with [http://kanaya.naist.jp/KNApSAcK/ NAIST])
+|}
+|style="width:45%;vertical-align:top;padding-left:0.2em" |
+===<span style="border-bottom:3px solid #a00">{{Bilingual|基礎代謝物|Basic Metabolites}}</span>===
+{| style="border-style:none;border-collapse:collapse"
+|-
+| style="vartical-align:top" |
+<p>
+Basic metabolites include organic and amino acids, DNAs, and other essential metabolites ({{#countTitle:BM|}} data now).
+* [[:Category:BM|{{bilingual|トップ|BM top}}]]
+<!---
+* [[Index:BM|{{bilingual|索引|Index by weight/formula}}]]
+--->
+</p>
+| style="vartical-align:top" |
+<small>(not ready. will be organized soon)</small>
+|}
+|}
+{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
+| style="width:50%;vertical-align:top;padding-left:0.2em" |
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[Index:PS|{{Large|P}}<big>lants</big>]] {{bilingual|植物 データベース|}}</h2>
+{| style="background-color:transparent;border-style:none;border-collapse:collapse"
+|-
+| style="vartical-align:top" |
+| [[Image:Flower.jpg]]
+| style="vartical-align:top" |
+<p>
+* [[Index:PS|{{bilingual|トップ|Plants top}}]]
+* [[Index:PlantSpecies/Order|{{bilingual|目名一覧|Plant orders}}]]
+* [[Persist:PlantFamilyList|{{bilingual|科名一覧|Plant families}}]]
+* {{bilingual|植物の属（現在{{#countTitle:.*|Species}}属）をみるには|For each genus ({{#countTitle:.*|Species}} genera now), access}}<br/>
+<nowiki>http://metabolomics.jp/wiki/Species:GENUS</nowiki>.
+</p>
+|}
+| style="width:50%;vertical-align:top;padding-left:0.2em" |
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[:Category:CD|{{Large|C}}<big>rude</big> {{Large|D}}<big>rug/Kampo</big>]] {{bilingual|漢方・生薬 データベース|}}</h2>
+{| style="background-color:transparent;border-style:none;border-collapse:collapse"
+|-
+| style="vartical-align:middle" |
+| [[Image:Crudedrug.jpg|50px]]
+| style="vartical-align:top" |
+<p>
+* [[:Category:CD|{{bilingual|トップ|Crude Drug top}}]]
+* [[Index:CD|{{bilingual|総索引|General index}}]]
+* [[Persist:CrudeDrugList|{{bilingual|生薬一覧|Crude Drug index}}]]
+* [[Persist:KampoList|{{bilingual|処方一覧|Prescription index}}]]
+* [[Persist:KampoReference|{{bilingual|文献一覧|Kampo books}}]]
+(with [http://kanaya.naist.jp/KNApSAcK/ NAIST] & [http://www.inm.u-toyama.ac.jp/index-j.html Toyama Univ.])
+</p>
+|}
+|}
+<br style="clear:both" />
+{| style="background-color:transparent;width:100%;border-style:none;border-collapse:collapse"
+|
+<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #CC6600;margin:0.2em;padding:0.2em">{{Large|L}}<big>inks</big></h2>
+<div style="padding:0.1em 0em;margin:0.1em 0em">
+'''Allied DB''' : [http://kanaya.naist.jp/KNApSAcK/KNApSAcK.php KNApSAcK] : [http://massbank.jp/ MassBank] : [http://lipidbank.jp/ LipidBank]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Spectral DB''' : [http://www.hmdb.ca/ HMDB] : [http://webbook.nist.gov/ NIST Chemistry WebBook] : [http://www.nist.gov/srd/nist1a.htm NIST Library search program] : [http://www.aist.go.jp/RIODB/SDBS/cgi-bin/cre_index.cgi SDBS] : [http://www.spectroscopynow.com/ SpectroscopyNow] : [http://cds.dl.ac.uk/cds/cds.shtml UK Chemical DB Service] : [http://www.bmrb.wisc.edu/metabolomics/ Univ Wisconsin BioMagResBank] : [http://www.ualberta.ca/~gjones/mslib.htm Univ. Alberta MS library] : [http://www.ccrc.uga.edu/specdb/specdbframe.html Univ. Georgia Complex Carbohydrate DB] : [http://www.chempensoftware.com/organicreactions.htm Univ. Pennsylvania ChemPen Project]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Chemical DB''' : [http://chemfinder.cambridgesoft.com/ ChemFinder] : [http://www.mdli.com/downloads/public/ctfile/ctfile.jsp CTFile format] : [http://www.daylight.com/release/f_manuals.html Daylight Documentation] : [http://chemdat.merck.de/mda/int_en/catalog/ Merck online catalog] : [http://cactus.nci.nih.gov/services/ NCI database] : [http://pubchem.ncbi.nlm.nih.gov/ PubChem] : [http://blaster.docking.org/zinc/ ZINC]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em"> '''Pathway DB''' : [http://www.biocarta.com/genes/index.asp BioCarta] : [http://www.expasy.org/tools/pathways/ Biochemical Pathways] : [http://biocyc.org/ BioCyc] : [http://www.genome.ad.jp/kegg/ KEGG] : [http://umbbd.ahc.umn.edu/ Univ. Minnesota BBD] : [http://kpv.kazusa.or.jp/kappa-view/ KaPPA-View] : [http://gabi.rzpd.de/projects/MapMan/ MapMan] : [http://www.arabidopsis.org/ TAIR]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Natural Compound DB''' : [http://www.au-techno.com/tennen/ AU techno-service Co.] : [http://www2.odn.ne.jp/~had26900/constituents/chemcon_dict.htm Encyclopaedia of Plant Metabolites] : [http://pherobase.com/ Pherobase]
+</div>
+<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
+'''Genome DB''' : [http://mbgd.genome.ad.jp/ MBGD: Microbial Genome Database] : [http://ecoli.naist.jp/GB6/search.jsp Genobase] : [http://www.sgn.cornell.edu/solanaceae-project/ Sol genomics network]
+</div>
+|}

Main Page

Revision as of 08:42, 9 September 2012

Updates

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Flavonoid Database

Basic Metabolites

Plants

Crude Drug/Kampo

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