PKS:ANid01*

From Metabolomics.JP
(Difference between revisions)
Jump to: navigation, search
m
 
(8 intermediate revisions by one user not shown)
Line 1: Line 1:
 
{{{{NAMESPACE}}/Header}}
 
{{{{NAMESPACE}}/Header}}
 
{{PKSinfo
 
{{PKSinfo
−
|species=Emericella nidulans
+
|species=Aspergillus nidulans FGSC 26
 
|taxonomy=Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Pezizomycotina; Leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Emericella
 
|taxonomy=Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Pezizomycotina; Leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Emericella
 
|product=sterigmatocystin
 
|product=sterigmatocystin
Line 7: Line 7:
 
|UniProt=Q12397
 
|UniProt=Q12397
 
|UniRef90=Q12397
 
|UniRef90=Q12397
−
|geneName=pksST
+
|UniRef50=Q12053
 +
|geneName=pksST(stcA)
 
|MAPSI=KS-AT-ACP-ACP-CYC
 
|MAPSI=KS-AT-ACP-ACP-CYC
 
|CDD=KS-AT-PP-PP-TE
 
|CDD=KS-AT-PP-PP-TE
Line 13: Line 14:
 
|reliability=putative
 
|reliability=putative
 
|description=polyketide synthase [Emericella nidulans]
 
|description=polyketide synthase [Emericella nidulans]
−
|information=sterigmatocystin. Locus=EMESTCA. AAA81586(Q12397). Putative sterigmatocystin biosynthesis polyketide synthase-Involved in the synthesis of the polyketide nucleus of sterigmatocystin from hexanoyl-CoA and seven malonates
+
|information=Identical proteins=AAC49191. Possible strain: A. nidulans FGSC26 (Locus=EMESTCA. AAA81586(Q12397). Putative sterigmatocystin biosynthesis polyketide synthase-Involved in the synthesis of the polyketide nucleus of sterigmatocystin from hexanoyl-CoA and seven malonates)
 
|length=2181
 
|length=2181
 +
|references=\*Yu.+1995$~\*Varga.+2003$~\*John.+2008$~\*Valarmathi.+2009$~\*Fisch.+2009$~\*Li.+2010$~\Brown.+1996$
 
}}
 
}}
 
{{{{NAMESPACE}}/Footer}}
 
{{{{NAMESPACE}}/Footer}}

Latest revision as of 20:18, 10 May 2012

Polyketide Top Species List UniRef90 Class UniRef50 Class Gene Class Domains
(by CDD) 		Domains
(by MAPSI)
Aspergillus nidulans FGSC 26 (GenBank AAA81586) all species
Class NRPKS (length: 2181) all classes   Class in KS domain phylogeny Reliability putative
Product sterigmatocystin GeneName pksST(stcA)
UniProt,UniRef90 Q12397 , Q12397 UniRef50 Q12053
Domain by MAPSI KS-AT-ACP-ACP-CYC

(notation help / all patterns)

Domain by CDD KS-AT-PP-PP-TE

(notation help / all patterns)

Domain by ITER-DB {{{ITERDB}}}

(notation help / all patterns)

Estimated Domain
Description polyketide synthase [Emericella nidulans]
Information Identical proteins=AAC49191. Possible strain: A. nidulans FGSC26 (Locus=EMESTCA. AAA81586(Q12397). Putative sterigmatocystin biosynthesis polyketide synthase-Involved in the synthesis of the polyketide nucleus of sterigmatocystin from hexanoyl-CoA and seven malonates)
References
  • Brown DW, Yu JH, Kelkar HS, Fernandes M, Nesbitt TC, Keller NP, Adams TH, Leonard TJ: Twenty-five coregulated transcripts define a sterigmatocystin gene cluster in aspergillus nidulans. Proc Natl Acad Sci U S A 93(4):1418-1422, 1996
  • Fisch KM, Gillaspy AF, Gipson M, Henrikson JC, Hoover AR, Jackson L, Najar FZ, Wagele H, Cichewicz RH: Chemical induction of silent biosynthetic pathway transcription in aspergillus niger. J Ind Microbiol Biotechnol 36(9):1199-1213, 2009
  • John U, Beszteri B, Derelle E, Van de Peer Y, Read B, Moreau H, Cembella A: Novel insights into evolution of protistan polyketide synthases through phylogenomic analysis. Protist 159:21-30, 2008
  • Li Y, Image, II, Xu W, Image I, Tang Y: Classification, prediction, and verification of the regioselectivity of fungal polyketide synthase product template domains. J Biol Chem 285(30):22764-22773, 2010
  • Valarmathi R, Hariharan GN, Venkataraman G, Parida A: Characterization of a non-reducing polyketide synthase gene from lichen dirinaria applanata. Phytochemistry 70(6):721-729, 2009
  • Varga J, Rigo K, Kocsube S, Farkas B, Pal K: Diversity of polyketide synthase gene sequences in Aspergillus species. Res Microbiol 154:593-600, 2003
  • Yu JH, Leonard TJ: Sterigmatocystin biosynthesis in aspergillus nidulans requires a novel type i polyketide synthase. J. Bacteriol. 177(16):4792-4800, 1995
Link AspGD

This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)

Retrieved from "http://metabolomics.jp/mediawiki/index.php?title=PKS:ANid01*&oldid=282873"
Personal tools
Namespaces

Variants
Actions
Navigation
metabolites
Toolbox