PKS:ANid01*

From Metabolomics.JP
(Difference between revisions)
Jump to: navigation, search
Line 16: Line 16:
 
|information=sterigmatocystin. Locus=EMESTCA. AAA81586(Q12397). Putative sterigmatocystin biosynthesis polyketide synthase-Involved in the synthesis of the polyketide nucleus of sterigmatocystin from hexanoyl-CoA and seven malonates
 
|information=sterigmatocystin. Locus=EMESTCA. AAA81586(Q12397). Putative sterigmatocystin biosynthesis polyketide synthase-Involved in the synthesis of the polyketide nucleus of sterigmatocystin from hexanoyl-CoA and seven malonates
 
|length=2181
 
|length=2181
 +
|references=\*Varga.+2003$~\*John.+2008$~\*Valarmathi.+2009$~\*Fisch.+2009$~\*Li.+2010$
 
}}
 
}}
 
{{{{NAMESPACE}}/Footer}}
 
{{{{NAMESPACE}}/Footer}}

Revision as of 13:35, 6 April 2012

Polyketide Top Species List UniRef90 Class UniRef50 Class Gene Class Domains
(by CDD)
Domains
(by MAPSI)
Emericella nidulans (GenBank AAA81586) all species
Class NRPKS (length: 2181) all classes   Class in KS domain phylogeny Reliability putative
Product sterigmatocystin GeneName pksST
UniProt,UniRef90 Q12397 , Q12397 UniRef50 Q12053
Domain by MAPSI KS-AT-ACP-ACP-CYC

(notation help / all patterns)

Domain by CDD KS-AT-PP-PP-TE

(notation help / all patterns)

Domain by ITER-DB {{{ITERDB}}}

(notation help / all patterns)

Estimated Domain
Description polyketide synthase [Emericella nidulans]
Information sterigmatocystin. Locus=EMESTCA. AAA81586(Q12397). Putative sterigmatocystin biosynthesis polyketide synthase-Involved in the synthesis of the polyketide nucleus of sterigmatocystin from hexanoyl-CoA and seven malonates
References
  • Fisch KM, Gillaspy AF, Gipson M, Henrikson JC, Hoover AR, Jackson L, Najar FZ, Wagele H, Cichewicz RH: Chemical induction of silent biosynthetic pathway transcription in aspergillus niger. J Ind Microbiol Biotechnol 36(9):1199-1213, 2009
  • John U, Beszteri B, Derelle E, Van de Peer Y, Read B, Moreau H, Cembella A: Novel insights into evolution of protistan polyketide synthases through phylogenomic analysis. Protist 159:21-30, 2008
  • Li Y, Image, II, Xu W, Image I, Tang Y: Classification, prediction, and verification of the regioselectivity of fungal polyketide synthase product template domains. J Biol Chem 285(30):22764-22773, 2010
  • Valarmathi R, Hariharan GN, Venkataraman G, Parida A: Characterization of a non-reducing polyketide synthase gene from lichen dirinaria applanata. Phytochemistry 70(6):721-729, 2009
  • Varga J, Rigo K, Kocsube S, Farkas B, Pal K: Diversity of polyketide synthase gene sequences in Aspergillus species. Res Microbiol 154:593-600, 2003
Link AspGD

This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)

Personal tools
Namespaces

Variants
Actions
Navigation
metabolites
Toolbox