Category:BM
From Metabolomics.JP
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代謝とは, 生体内でおこなわれる物理化学反応の総体, または特定の分子に関与する物理化学反応の総体です. 機能の観点から, 生命の維持に必須の物質群に関わる基礎/一次代謝と, 生命維持に必須ではない二次代謝に分けられます. 生命に欠かせない核酸, アミノ酸, 糖, 脂肪酸 (それぞれＤＮＡ，タンパク質，炭水化物, 脂質の構成単位) は基礎代謝物とよばれ, また植物に必須のリグニンやセルロースも基礎代謝物に分類されます. これに対し二次代謝は, 生物種に固有の機能を提供する部分です. 抗生物質や生薬など, 人間が利用してきた薬効成分はいずれも二次代謝物に属します. | 代謝とは, 生体内でおこなわれる物理化学反応の総体, または特定の分子に関与する物理化学反応の総体です. 機能の観点から, 生命の維持に必須の物質群に関わる基礎/一次代謝と, 生命維持に必須ではない二次代謝に分けられます. 生命に欠かせない核酸, アミノ酸, 糖, 脂肪酸 (それぞれＤＮＡ，タンパク質，炭水化物, 脂質の構成単位) は基礎代謝物とよばれ, また植物に必須のリグニンやセルロースも基礎代謝物に分類されます. これに対し二次代謝は, 生物種に固有の機能を提供する部分です. 抗生物質や生薬など, 人間が利用してきた薬効成分はいずれも二次代謝物に属します. | ||
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| + | ==Design of Basic Metabolite ID numbers <small>ID番号の設計</small>== | ||
| + | <center> | ||
| + | 12-DIGIT | ||
| + | <table border=1> | ||
| + | <tr> | ||
| + | <td style="background-color:yellowgreen;" width=15px align="center"><big>B</big> | ||
| + | <td style="background-color:yellowgreen;" width=15px align="center"><big>M</big> | ||
| + | <td style="background-color:darkseagreen;" width=15px align="center"><big>''a''</big> | ||
| + | <td style="background-color:darkseagreen;" width=15px align="center"><big>''a''</big> | ||
| + | <td style="background-color:tomato; color:white" width=15px align="center"><big>''b''</big> | ||
| + | <td style="background-color:tomato; color:white" width=15px align="center"><big>''b''</big> | ||
| + | <td style="background-color:firebrick; color:white" width=15px align="center"><big>''c''</big> | ||
| + | <td style="background-color:firebrick; color:white" width=15px align="center"><big>''c''</big> | ||
| + | <td style="background-color:green; color:white;" width=15px align="center"><big>''d''</big> | ||
| + | <td style="background-color:green; color:white" width=15px align="center"><big>''d''</big> | ||
| + | <td style="background-color:white;" width=15px align="center"><big>''e''</big> | ||
| + | <td style="background-color:white;" width=15px align="center"><big>''e''</big> | ||
| + | </tr> | ||
| + | </table> | ||
| + | </center> | ||
| + | {{Twocolumn| | ||
| + | * ''a'' ... Structure type (Table 1) | ||
| + | * ''b'' ... degree of unsaturation (Table 2) | ||
| + | * ''c'' ... position of n－''z'' (n minus z; also ω－z or omega-z) nomenclature (Table 3) | ||
| + | * ''d'' ... structure type (Table 4) | ||
| + | * ''e'' ... serial number | ||
| + | | | ||
| + | * ''a'' ... 炭素鎖長(Table 1) | ||
| + | * ''b'' ... 不飽和度(Table 2) | ||
| + | * ''c'' ... n－''z'' (またはω－''z''やomega-''z'') における数(Table 3) | ||
| + | * ''d'' ... 骨格のタイプ (Table 4) | ||
| + | * ''e'' ... 通し番号 | ||
}} | }} | ||
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&&BMXXB&&branched chain 分岐&& | &&BMXXB&&branched chain 分岐&& | ||
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Revision as of 15:01, 19 December 2008
Basic Metabolites (基礎代謝物)
Class Overview
(The following description is translated from an article by Arita in "Encyclopedia of Bioinformatics" under the publisher's permission, Kyoritsu Co. Ltd.)
Metabolism is the total body of physicochemical reactions inside living systems. It can be functionally divided into two groups: the basic (or primary) metabolism essential for maintenance of life systems, and the non-essential secondary metabolism. Basic metabolites therefore include bases, amino acids, sugars, and fatty acids (building blocks of DNA, protein, carbohydrate, and fat, respectively). Also included are lignin and cellulose which are essential for plant growth. On the other hand, the secondary metabolism provides species-specific functions. It includes medicinal metabolites such as antibiotics and herbal medicines.
Design of Basic Metabolite ID numbers ID番号の設計
12-DIGIT
| B | M | a | a | b | b | c | c | d | d | e | e |
- a ... Structure type (Table 1)
- b ... degree of unsaturation (Table 2)
- c ... position of n－z (n minus z; also ω－z or omega-z) nomenclature (Table 3)
- d ... structure type (Table 4)
- e ... serial number
Subcategories
This category has the following 8 subcategories, out of 8 total.
