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This site is developed & maintained by: [[User:Aritalab|Arita Laboratory, The University of Tokyo]] (東大 理 有田研) [[Help:Contents|More...]]
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Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
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== Getting started ==
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* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
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===<span style="border-bottom:3px solid #aa0">{{Bilingual|最新情報|Updates}}</span>===
* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
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* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
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* 食品の暫定基準値が 100 Bq/kg に変更されたのにあわせ、[[Doc:Radiation|放射線情報]]を改訂しました
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* [http://cbi-society.org/cbi/taikai/taikai12/ 生命医薬情報学連合大会]の発表募集がはじまりました。
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* [http://archive.genomeconference.org/File/Mp4/ISCB-Asia-2012/ISCB-Asia-2012.html ISCB Asia] Call for papers
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===<span style="border-bottom:3px solid #0ac">{{Bilingual|イベント、公募|Events, Job Openings}}</span>===
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* {{Bilingual
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|[http://www.riken.jp/r-world/info/recruit/k110208_s_psc.html バイオインフォ&計量化学の研究員募集] 理研植物科学研究センター
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|[http://www.riken.jp/engn/r-world/info/recruit/k110208_s_psc.html Bioinformatics & chemo-metrics position] at RIKEN Plant Science Center }}
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* {{Bilingual
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|[[User:Aritalab/PhD|有田研で学びたい方へ]]
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|[[User:Aritalab/PhD|How to pursue Ph. D. program (and post-doc)]] at Arita Laboratory (U Tokyo) }}
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* {{Bilingual
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| 名古屋大で生命理学[http://www.bio.nagoya-u.ac.jp/index2.html 教授職]公募。
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| [http://www.bio.nagoya-u.ac.jp/index2.html Prof position] at Nagoya Univ}}
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===<span style="border-bottom:3px solid #060">{{Bilingual|フラボノイド データベース|Flavonoid Database}}</span>===
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|-
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| [[Image:Leaf.jpg]]
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Flavonoids such as catechin, anthocyanin, flavan are important for our health ({{#countTitle:FL|}} data now).
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* [[:Category:FL|{{bilingual|トップ|Flavonoid top}}]]
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* [[Index:FL    |{{bilingual|索引|Index by name/weight/formula}}]]
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* [[Index:Journal_Titles|{{bilingual|ジャーナル|Journals reporting flavonoid}}]]
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(compilation with [http://kanaya.naist.jp/KNApSAcK/ NAIST])
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===<span style="border-bottom:3px solid #a00">{{Bilingual|基礎代謝物|Basic Metabolites}}</span>===
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<p>
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Basic metabolites include organic and amino acids, DNAs, and other essential metabolites ({{#countTitle:BM|}} data now).
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* [[:Category:BM|{{bilingual|トップ|BM top}}]]
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<!---
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* [[Index:BM|{{bilingual|索引|Index by weight/formula}}]]
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--->
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<small>(not ready. will be organized soon)</small>
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<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[Index:PS|{{Large|P}}<big>lants</big>]] {{bilingual|植物 データベース|}}</h2>
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| [[Image:Flower.jpg]]
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* [[Index:PS|{{bilingual|トップ|Plants top}}]]
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* [[Index:PlantSpecies/Order|{{bilingual|目名一覧|Plant orders}}]]
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* [[Persist:PlantFamilyList|{{bilingual|科名一覧|Plant families}}]]
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* {{bilingual|植物の属(現在{{#countTitle:.*|Species}}属)をみるには|For each genus ({{#countTitle:.*|Species}} genera now), access}}<br/>
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<nowiki>http://metabolomics.jp/wiki/Species:GENUS</nowiki>.
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<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[:Category:CD|{{Large|C}}<big>rude</big> {{Large|D}}<big>rug/Kampo</big>]] {{bilingual|漢方・生薬 データベース|}}</h2>
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| [[Image:Crudedrug.jpg|50px]]
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<p>
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* [[:Category:CD|{{bilingual|トップ|Crude Drug top}}]]
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* [[Index:CD|{{bilingual|総索引|General index}}]]
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* [[Persist:CrudeDrugList|{{bilingual|生薬一覧|Crude Drug index}}]]
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* [[Persist:KampoList|{{bilingual|処方一覧|Prescription index}}]]
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* [[Persist:KampoReference|{{bilingual|文献一覧|Kampo books}}]]
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(with [http://kanaya.naist.jp/KNApSAcK/ NAIST] & [http://www.inm.u-toyama.ac.jp/index-j.html Toyama Univ.])
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<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #CC6600;margin:0.2em;padding:0.2em">{{Large|L}}<big>inks</big></h2>
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<div style="padding:0.1em 0em;margin:0.1em 0em">
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'''Allied DB''' : [http://kanaya.naist.jp/KNApSAcK/KNApSAcK.php KNApSAcK] : [http://massbank.jp/ MassBank] : [http://lipidbank.jp/ LipidBank]
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'''Spectral DB''' : [http://www.hmdb.ca/ HMDB] : [http://webbook.nist.gov/ NIST Chemistry WebBook] : [http://www.nist.gov/srd/nist1a.htm NIST Library search program] : [http://www.aist.go.jp/RIODB/SDBS/cgi-bin/cre_index.cgi SDBS] : [http://www.spectroscopynow.com/ SpectroscopyNow] : [http://cds.dl.ac.uk/cds/cds.shtml UK Chemical DB Service] : [http://www.bmrb.wisc.edu/metabolomics/ Univ Wisconsin BioMagResBank] : [http://www.ualberta.ca/~gjones/mslib.htm Univ. Alberta MS library] : [http://www.ccrc.uga.edu/specdb/specdbframe.html Univ. Georgia Complex Carbohydrate DB] : [http://www.chempensoftware.com/organicreactions.htm Univ. Pennsylvania ChemPen Project]
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'''Chemical DB''' : [http://chemfinder.cambridgesoft.com/ ChemFinder] : [http://www.mdli.com/downloads/public/ctfile/ctfile.jsp CTFile format] : [http://www.daylight.com/release/f_manuals.html Daylight Documentation] : [http://chemdat.merck.de/mda/int_en/catalog/ Merck online catalog] : [http://cactus.nci.nih.gov/services/ NCI database] : [http://pubchem.ncbi.nlm.nih.gov/ PubChem] : [http://blaster.docking.org/zinc/ ZINC]
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<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em"> '''Pathway DB''' : [http://www.biocarta.com/genes/index.asp BioCarta] : [http://www.expasy.org/tools/pathways/ Biochemical Pathways] : [http://biocyc.org/ BioCyc] : [http://www.genome.ad.jp/kegg/ KEGG] : [http://umbbd.ahc.umn.edu/ Univ. Minnesota BBD] : [http://kpv.kazusa.or.jp/kappa-view/ KaPPA-View] : [http://gabi.rzpd.de/projects/MapMan/ MapMan] : [http://www.arabidopsis.org/ TAIR]
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'''Natural Compound DB''' : [http://www.au-techno.com/tennen/ AU techno-service Co.] : [http://www2.odn.ne.jp/~had26900/constituents/chemcon_dict.htm Encyclopaedia of Plant Metabolites] : [http://pherobase.com/ Pherobase]
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<div style="border-top:1px dashed steelblue;padding:0.1em 0em;margin:0.1em 0em">
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'''Genome DB''' : [http://mbgd.genome.ad.jp/ MBGD: Microbial Genome Database] : [http://ecoli.naist.jp/GB6/search.jsp Genobase] : [http://www.sgn.cornell.edu/solanaceae-project/ Sol genomics network]
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Revision as of 08:42, 9 September 2012


This site is developed & maintained by: Arita Laboratory, The University of Tokyo (東大 理 有田研) More...

Updates

Events, Job Openings

Flavonoid Database

Leaf.jpg

Flavonoids such as catechin, anthocyanin, flavan are important for our health (6961 data now).

(compilation with NAIST)

Basic Metabolites

Basic metabolites include organic and amino acids, DNAs, and other essential metabolites (1948 data now).

(not ready. will be organized soon)


Plants

Flower.jpg

http://metabolomics.jp/wiki/Species:GENUS.

Crude Drug/Kampo

Crudedrug.jpg

(with NAIST & Toyama Univ.)


Links

Allied DB : KNApSAcK : MassBank : LipidBank

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