Category:BM

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==Class Overview==
 
==Class Overview==
 
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Revision as of 21:04, 8 March 2009

Basic Metabolites (基礎代謝物)

Template:BasicMetabolite/Header

Class Overview

(The following description is translated from an article by Arita in "Encyclopedia of Bioinformatics" under the publisher's permission, Kyoritsu Co. Ltd.)

Metabolism is the total body of physicochemical reactions inside living systems. It can be functionally divided into two groups: the basic (or primary) metabolism essential for maintenance of life systems, and the non-essential secondary metabolism. Basic metabolites therefore include bases, amino acids, sugars, and fatty acids (building blocks of DNA, protein, carbohydrate, and fat, respectively). Also included are lignin and cellulose which are essential for plant growth. On the other hand, the secondary metabolism provides species-specific functions. It includes medicinal metabolites such as antibiotics and herbal medicines.

Design of Basic Metabolite ID numbers ID番号の設計

12-DIGIT

B M a a b b c c d d e e

  • a ... Structure type (Table 1)
  • b ... degree of unsaturation (Table 2)
  • c ... position of n-z (n minus z; also ω-z or omega-z) nomenclature (Table 3)
  • d ... structure type (Table 4)
  • e ... serial number

Table 1. Classification of Basic Metabolites
1st Class
BMIO: Inorganics
無機物
BMIO.png
metals, phosphates etc.
金属、燐酸等
BMAA: Amino acids
アミノ酸
BMAA.png
proper amino acids
BMAX: Amino acid derivatives
アミノ酸誘導体
BMAX.png
peptides etc.
修飾物、ペプチド等
BMAC: Amino-cyclic
環をもつアミノ酸
BMAC.png
Trp, Pro, His etc.
BMMC: Mono-cyclic
単環
BMMC.png
benzene, pyrimidine etc.
ベンゼン、ピリミジン環
BMCC: Conjugated cyclic
複合環
BMCC.png
purine, porphyrin etc.
プリン、ポルフィリン環
BMFY: Fat acyl
アシル
BMFY.png
Tree-shaped
樹状のもの
BMSU: Sugar
炭水化物
100px
mono, disaccharide
単糖、二糖
BMXX: Others
その他
BMXX.png


Subcategories

This category has the following 8 subcategories, out of 8 total.

B

  • [×] BMAA(empty)
  • [×] BMAC(empty)
  • [×] BMAX(empty)

B cont.

  • BMCC(3 C)
  • [×] BMFY(empty)
  • [×] BMIO(empty)

B cont.

Pages in category "BM"

The following 2 pages are in this category, out of 2 total.

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