BM All

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==Category description==
 
==Category description==
This page introduces a hierarchical classification of flavonoid structures.
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This page introduces a hierarchical classification of basic metabolites.
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<br>
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Class Description
 +
{{ClassifiedTable|1=
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  BMIO && Inorganic Chemcals && Metals, Halogens, Nitrogen, Sulfur, Phosphorus compounds
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&& BMAA && Amino acids && Basic amino acids(composing protein), their modified form(excluding carbon chain modification) and their isomeric form
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&& BMAD && Amino acids derivatives && Amino acids(excluding basic a.a.), Basic a.a. with additional carbon chain and Peptides
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&& BMFY && Fatty Acyl and Related Molecules && Carboxylic acid, Aldehyde, Alcohol, Amine, Phosphate, Sulfate and so on
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&& BMMC && mono-cyclic or asssembled cyclic molecules && benzene, pyrimidine, pyridine, imidazole, thiazole, quinone, retinol, pyrrolidin, lacton, aliphatic cyclic, hetero cyclic, asembled
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&& BMCC && conjugated cyclic molecules && purine, pteridine, porphyrin, indole, tocopherol, quinoline, naphthalen, condensed ring, bridged structure
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&& BMxx && others && other metabolite related molecules
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}}
  
{| class="wikitable" border="1" cellpadding="2" cellspacing="1" style="font-size: smaller; float: center; clear: none; margin: 1em 1em 1em 1em"
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|-
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Basic metabolites ID list
! ID
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{{ClassifiedTable|1=
! Description
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BMIO && BMIOOX && oxidized elements &&&& BMIOMT && metals and halogens (and other atomic elements) &&  
! Note
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    && BMIONT && nitrogen compounds &&  
|-
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    && BMIOPP && phosphates &&  
{{#repeat: PreTableRow3|1|
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    && BMIOSF && sulfates &&
<!---START OF ABBREV & TITLE & URL --->
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BMAA && BMAASn && straight-chain amino acids(with carbon chain length:n) &&
&& IO && (inorganics) &&
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    && BMAABn && branched-chain amino acids(with carbon chain length:n) &&
&& IOOX && oxidized elements (CO2, NH3, and so on) &&
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    && BMAACC && cyclic and aromatic amino acids &&
&& IOMT && metals and halogens (and other atomic elements) &&
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    && BMAACCBZ && cyclic and aromatic amino acids with benzene ring &&
&& BM && (basic metabolites including organic acids, ketones, alcohols, hydrocarbons, and DNA bases) &&
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    && BMAACCID && cyclic and aromatic amino acids with indole ring &&
&& BMAA && amino acids  &&
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    && BMAACCPL && cyclic and aromatic amino acids with pyrrolidine ring &&
&& BMAAST && straight-chain amino acids &&
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    && BMAACCIZ && cyclic and aromatic amino acids with imidazole ring &&
&& BMAABT && branched-chain amino acids  &&
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BMAD && BMADSn && straight-chain amino acid derivatives(with carbon chain length:n) &&
&& BMAACA && cyclic and aromatic amino acids &&
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    && BMADBn && branched-chain a.a. derivatives(with carbon chain length:n) &&
&& BMAD && amino acid derivatives including peptides &&
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    && BMADCC && cyclic and aromatic a.a. derivatives &&
&& BMSC && straight-chain molecules &&
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    && BMADCCBZ && a.a. derivatives with benzene ring &&
&& BMBC && branched-chain molecules &&
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    && BMADCD && a.a. derivatives with indole ring &&
&& BMBC01 && with one branch &&
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    && BMADCZ && a.a. derivatives with imidazole ring &&
&& BMBC02 && with two branch &&
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    && BMADCX && a.a. derivatives with other cyclic molecules &&
&& BMBC03 && with three branch &&
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    && BMADDP && dipeptide &&
&& BMMC && mono-cyclic or cyclic assembled molecules &&
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    && BMADTP && tripeptide &&
&& BMMCBZ && with benzene ring  &&
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BMFY && BMFYSn && straight-chain molecules(with carbon chain length:n) &&
&& BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) &&
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    && BMFYBn && branched-chain molecules(with carbon chain length:n) &&
&& BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) &&
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BMxx && other metabolite related molecules &&
&& BMMCIZ && with imidazole ring  &&
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    && BMxxSx && CO2, CH4 and so on &&
&& BMMCTZ && with thiazole ring (thiamine->BMMCPY) &&
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    && BMxxBx && Trimethyl-amine, Isobutyro-nitrile and so on &&
&& BMMCVA && with retinol ring (vitamin A)  &&
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BMMC && mono-cyclic or cyclic assembled molecules &&
&& BMMCXX && other ring systems (other ring systems, epoxide, cyclohexane, cyclopentane, hetero aromatic, lacton, assembled, other) &&
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    && BMMCBZ && with benzene ring  &&
&& BMCC && conjugated cyclic molecules &&
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    && BMMCBZ && with benzene ring (Substituent = 0-1,2o,2m,2p,3,4-6) &&
&& BMCCID && with indole ring &&
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    && BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) &&
&& BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) &&
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    && BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) &&
&& BMCCPT && with pteridine ring (pterin, flavine ...)  &&
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    && BMMCPYCT && with Cytosine &&
&& BMCCPP && with porphyrin ring (V12, cobalamine, heme) &&
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    && BMMCPYTY && with Thymine &&
&& BMCCVE && with tocopherol ring (vitamin E)  &&
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    && BMMCPYUR && with Uracil &&
&& BMCCXX && other ring systems (biotin, naphthalen, bridged, condensed) &&
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    && BMMCPYXX && Others &&
<!---END OF ID & DESCRIPTION & NOTE --->
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    && BMMCIZ && with imidazole ring  &&
|\n|1=}}
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    && BMMCTZ && with thiazole ring (thiamine) &&
|}
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    && BMMCVA && with retinol ring (vitamin A)  &&
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    && BMMCQN && with Quinone &&
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    && BMMCPL && with Pyrrolidine &&
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    && BMMCLA && with lacton &&
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    && BMMCAC && alicyclic molecules &&
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    && BMMCACCH && cyclohexan &&
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    && BMMCACEN && cyclohexen &&
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    && BMMCACDE && cyclohexadien &&
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    && BMMCACxx && others &&
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    && BMMCHE && hetero aromatic molecules &&
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    && BMMCAS && assembled &&
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BMCC && conjugated cyclic molecules &&
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    && BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) &&
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    && BMCCPUCA && with CoA &&
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    && BMCCPUAD && with Adenine &&
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    && BMCCPUGU && with Guanine &&
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    && BMCCPUIN && with Inosine &&
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    && BMCCPUXX && others(Xanthine) &&
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    && BMCCPT && with pteridine ring (pterin, flavine ...)  &&
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    && BMCCPTFL && with Flavin &&
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    && BMCCPTFO && with Folic acid &&
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    && BMCCPTPD && with Pteridine &&
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    && BMCCPTPT && with Pterine &&
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    && BMCCPP && with porphyrin ring (V12, cobalamine, heme) &&
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    && BMCCVE && with tocopherol ring (vitamin E)  &&
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    && BMCCID && with indole ring &&
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    && BMCCQL && with quinoline &&
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    && BMCCNP && with Naphthalen &&
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&& BMCCCR && with condensed ring &&
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&& BMCCBR && with bridged structure &&
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}}
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functional group list
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*CA carboxylic acid
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*DA dicarboxylic acid
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*SA semialdehyde
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*AL aldehyde
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*HO hydroxy
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*OX oxo
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*AM amide
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*AN amine
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*CN cyano, nitrile, nitro
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*PH phosphate
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*SF sulfur
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*KT ketone
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*CE CoA
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*UM unmodified
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*HL halogens
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*MT metals
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*ME methyl
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*AK alkyl (-CH2-X)
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*ES ester
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*AM amide
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*AN amine
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*PH phosphate
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*SF sulfur
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*CP complexed
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*CO carbonyl

Latest revision as of 18:24, 30 April 2008

[edit] Category description

This page introduces a hierarchical classification of basic metabolites.
Class Description

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ID Description Note


Basic metabolites ID list

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ID Description Note

functional group list

  • CA carboxylic acid
  • DA dicarboxylic acid
  • SA semialdehyde
  • AL aldehyde
  • HO hydroxy
  • OX oxo
  • AM amide
  • AN amine
  • CN cyano, nitrile, nitro
  • PH phosphate
  • SF sulfur
  • KT ketone
  • CE CoA
  • UM unmodified
  • HL halogens
  • MT metals
  • ME methyl
  • AK alkyl (-CH2-X)
  • ES ester
  • AM amide
  • AN amine
  • PH phosphate
  • SF sulfur
  • CP complexed
  • CO carbonyl
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