Template:MassBank/Matrix - Revision history

Adm at 07:27, 7 April 2011

2011-04-07T07:27:18Z

Adm: Undo revision 328883 by Adm (talk)

2011-04-07T05:59:56Z

Undo revision 328883 by Adm (talk)

Adm at 05:56, 7 April 2011

2011-04-07T05:56:47Z

Adm at 07:21, 1 December 2010

2010-12-01T07:21:30Z

Adm at 02:57, 28 December 2009

2009-12-28T02:57:38Z

Adm at 08:11, 23 December 2009

2009-12-23T08:11:58Z

Adm at 08:09, 23 December 2009

2009-12-23T08:09:55Z

Adm at 06:21, 24 November 2009

2009-11-24T06:21:43Z

Adm at 04:20, 24 November 2009

2009-11-24T04:20:52Z

Adm at 04:20, 24 November 2009

2009-11-24T04:20:05Z

@@ Line 28: / Line 28: @@
 |}
-=Top 10 Similar Molecules of {{#var:NAME}}=
+==Top 10 Similar Molecules of {{#var:NAME}}==
-{| class="collapsible collapsed"
+{| class="wikitable collapsible collapsed"
-! About the comparison measure
+! Ranking
 |-
+|
 {{#repeat:MassBank/Matrix/RankingLink|1|
 {{#lua:
@@ Line 97: / Line 94: @@
 }}
 }}
 =Links=
 {{#repeat:MassBank/SearchFgmt|1|
 {{#lua:
@@ Line 110: / Line 118: @@
 |{{{data|CHClFINOPS}}}
 }}|&&}}
-=Annotations=
+==Annotations==
 {{#ifeq:{{NAMESPACE}}|Ojima|
 <div style="float:right">
@@ Line 179: / Line 188: @@
 |~|{{#bar:}}}}
-=Precursor-Product Relationship=
+==Precursor-Product Relationship==
 {| class="collapsible collapsed"
 ! colspan="2"| About the PP Table (行列表示について)
@@ Line 233: / Line 242: @@
    ---Main Program---
-   local ruler = nil;
+   local ruler = nil; ---first line (list of fragments)---
-   local fragments = {};
+   local fragments = {}; ---following lines (head : tail style)---
    local x, y;
    ---Read Data---
@@ Line 243: / Line 253: @@
        ---register fragments---
        head, tail = string.match(line, "^&&(["..FORMULA_CHAR.."]+) *: *(["..FORMULA_CHAR.." ]+)$")
        if (head ~= nil and tail ~= nil) then
-         if (fragments[head] == nil) then y = {} else y = fragments[head] end
+         if (fragments[head] == nil)
          for x in string.gmatch(tail,"["..FORMULA_CHAR.."]+") do
            z = string.gsub(x,"*", "")
@@ Line 272: / Line 287: @@
    ---Check Fragments---
    for i,v in pairs(fragments) do
      if (not inRuler[i]) then print('<span style="color:red">Parent ion '..i..' does not exist.</span>') end
      for j,w in pairs(v) do
@@ Line 291: / Line 307: @@
    print("! {{PAGENAME}} \n")
    for i=1, table.getn(axis) do
-     print("#style='text-align:right'# '''" .. mass(axis[i]) .. "'''<br/>" .. axis[i])
+  ---If some fragments are focused then highlight the axis---
    end
    ---Rows---

@@ Line 233: / Line 233: @@
    ---Main Program---
-   local ruler = nil; ---first line (list of fragments)---
+   local ruler = nil;
-   local fragments = {}; ---following lines (head : tail style)---
+   local fragments = {};
-  local focus = {}; ---formulas that should be highlighted---
    local x, y;
    ---Read Data---
@@ Line 244: / Line 243: @@
        ---register fragments---
        head, tail = string.match(line, "^&&(["..FORMULA_CHAR.."]+) *: *(["..FORMULA_CHAR.." ]+)$")
        if (head ~= nil and tail ~= nil) then
-         if (fragments[head] == nil)
+         if (fragments[head] == nil) then y = {} else y = fragments[head] end
-          then y = {} else y = fragments[head] end
          for x in string.gmatch(tail,"["..FORMULA_CHAR.."]+") do
            z = string.gsub(x,"*", "")
@@ Line 278: / Line 272: @@
    ---Check Fragments---
    for i,v in pairs(fragments) do
      if (not inRuler[i]) then print('<span style="color:red">Parent ion '..i..' does not exist.</span>') end
      for j,w in pairs(v) do
@@ Line 298: / Line 291: @@
    print("! {{PAGENAME}} \n")
    for i=1, table.getn(axis) do
-     ---If some fragments are 'focused' then highlight the axis---
+     print("#style='text-align:right'# '''" .. mass(axis[i]) .. "'''<br/>" .. axis[i])
-    if (focused[axis[i]] ~= nil) then
-      print("#style='text-align:right;color:red'# '''" .. mass(axis[i]) .. "'''<br/>" .. axis[i])
-    else
-      print("#style='text-align:right'# '''" .. mass(axis[i]) .. "'''<br/>" .. axis[i])
-    end
    end
    ---Rows---

@@ Line 233: / Line 233: @@
    ---Main Program---
-   local ruler = nil;
+   local ruler = nil; ---first line (list of fragments)---
-   local fragments = {};
+   local fragments = {}; ---following lines (head : tail style)---
    local x, y;
    ---Read Data---
@@ Line 243: / Line 244: @@
        ---register fragments---
        head, tail = string.match(line, "^&&(["..FORMULA_CHAR.."]+) *: *(["..FORMULA_CHAR.." ]+)$")
        if (head ~= nil and tail ~= nil) then
-         if (fragments[head] == nil) then y = {} else y = fragments[head] end
+         if (fragments[head] == nil)
          for x in string.gmatch(tail,"["..FORMULA_CHAR.."]+") do
            z = string.gsub(x,"*", "")
@@ Line 272: / Line 278: @@
    ---Check Fragments---
    for i,v in pairs(fragments) do
      if (not inRuler[i]) then print('<span style="color:red">Parent ion '..i..' does not exist.</span>') end
      for j,w in pairs(v) do
@@ Line 291: / Line 298: @@
    print("! {{PAGENAME}} \n")
    for i=1, table.getn(axis) do
-     print("#style='text-align:right'# '''" .. mass(axis[i]) .. "'''<br/>" .. axis[i])
+     ---If some fragments are 'focused' then highlight the axis---
    end
    ---Rows---

@@ Line 308: / Line 308: @@
                print('#style="background-color:skyblue"# ' .. s)
              elseif (fragments[axis[j]][axis[i].."**"] ~= nil) then
-               print('#style="background-color:lightgray"# ' .. s)
+               print('#style="background-color:orange"# ' .. s)
              elseif (fragments[axis[j]][axis[i].."***"] ~= nil) then
                print('#style="background-color:beige"# ' .. s)

@@ Line 332: / Line 332: @@
 <!---- next/prev links at the page bottom---->
-{{#def:KeioID|{{#substring:{{#nth:{{#SearchLine:{{PAGENAME}}|Index|MassBank/Molecules}}|4|&&}}|0|4}}}}
+{{#def:KeioID|{{#ifeq:{{#substring:{{PAGENAME}}|0|2}}|KO|{{#substring:{{#nth:{{#SearchLine:{{PAGENAME}}|Index|MassBank/Molecules}}|4|&&}}|0|4}}|{{#substring:{{PAGENAME}}|0|8}}}}}}
 {{#repeat:MassBank/PrevNextLink|4|
 {{#lua:

@@ Line 310: / Line 310: @@
                print('#style="background-color:lightgray"# ' .. s)
              elseif (fragments[axis[j]][axis[i].."***"] ~= nil) then
-               print('#style="background-color:khaki"# ' .. s)
+               print('#style="background-color:beige"# ' .. s)
              elseif (fragments[axis[j]][axis[i].."****"] ~= nil) then
                print('#style="background-color:coral"# ' .. s)

@@ Line 328: / Line 328: @@
 <!---- next/prev links at the page bottom---->
-{{#def:KeioID|{{#substring:{{#nth:{{#SearchLine:{{PAGENAME}}|Index|MassBank/Molecules}}|4|&&}}|3|4}}}}
+{{#def:KeioID|{{#substring:{{#nth:{{#SearchLine:{{PAGENAME}}|Index|MassBank/Molecules}}|4|&&}}|0|3}}}}
 {{#repeat:MassBank/PrevNextLink|4|
 {{#lua: